Ltes000961.1
Basic Information
- Insect
- Linnaemya tessellans
- Gene Symbol
- -
- Assembly
- GCA_951800035.1
- Location
- OX637532.1:15024451-15029099[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00031 0.057 15.7 0.2 1 23 131 154 131 154 0.97 2 13 0.0097 1.8 10.9 3.6 2 23 203 225 199 225 0.88 3 13 0.0017 0.32 13.3 0.6 1 23 354 377 354 377 0.93 4 13 5.5 1e+03 2.3 3.0 2 23 427 449 426 450 0.91 5 13 0.012 2.3 10.6 0.1 1 23 533 556 533 556 0.91 6 13 0.001 0.19 14.0 2.4 2 23 607 629 607 629 0.97 7 13 1.3e-05 0.0024 20.0 0.4 1 23 737 760 737 760 0.97 8 13 7.3e-05 0.014 17.6 0.1 1 23 809 832 809 832 0.95 9 13 6.1 1.1e+03 2.1 1.2 1 23 850 874 850 874 0.73 10 13 0.0012 0.22 13.8 1.1 2 23 882 904 881 904 0.95 11 13 0.024 4.5 9.7 2.8 1 22 981 1002 981 1004 0.91 12 13 0.18 33 6.9 0.6 1 20 1056 1075 1056 1077 0.94 13 13 0.033 6.1 9.3 0.0 2 23 1158 1180 1157 1180 0.95
Sequence Information
- Coding Sequence
- atGGATAATCTTGAACCCTGGAGTATGTTTGGTAACGATTTAATGTCAGATGAAAGAAATGCGAATGAAATTGAGGGAAGTGGAGAGGGTGGTACAGATATTCCCTTTTCTATACCATCGCCGGTACAAGACATGCATGTCAAAGAAGAGCCCCAAGAAATTGCTGATGAAAGCTTCGACGATGATAATGACAATGTTCCGCTTCATTTTCTCGCTGAAGGGAACAGTAGAAATAATGATAGTCGCACTCGAAATCCCGAAGATGATAACGCTCTTTTTGATTTCGGCTTAGAATCATCAAATTCGCAAAATCGCTCGTTCGATTATCCTAATTTGGAGCCGGAAGACAAATACTATAACGCAATGATCAAATTTGAAGATGctataatatatatatgccCTGCCTGTGGGCATGAATTCAGCTCTCAAGATGCGTGGAAAAATCACTTGAACGTAAATCATCTTTATAATACACGTCGTGGcctaaattttatacaaattgatAAACTATACCATGAGTGTATGGAGTGTCACAAACGCATTGCCATGCACAGTATGGAAAACTTGCTCAAGCATAAATTCACCCATTTACCTTATCGTTGTAGCAAGTGTATGGTGTGTAAAAGGCAGTATAAATATAGACAGGATCTAATGGTACATTTGCGTATGAACCATCGTGACGATTTGAtagaacttttgaaaaaagaacataaaaattcaaaaaactcTAATTCCCAGCCGCAAACTATTCGTTCAATTTTGAGCAGGACGGAAAGTAACTCTAATAGGCCTAGTTTTTCTATTGGAACTGTTAAGGAAAATGCGAAAGATGTATTTGATAATATCGAAgtaaaaaatgaattaattaatgaaGATGAGGATGATACAATGGGGGAAGATAGCCAGCCACCACCAGCCAAAAGGCCGGCTAGGGATTTGCCTACTTTCCTTGAAGATGGATCTACAAATGGTTCCGCCAACGATCAACCTCCTACAAGTCGTTCTAATAAACCCGCGGCGGGTGACGAAATCGATGTTTCGCTTGAAGAATATATATTGTTCACATGCCCTCAATGCGGTACTGAATGTGAAACACAAGCTCAATGGCGTCAACATATTGAATTCGTACATGAATTTGGCACGCGAAGAGGCTTGAATTTTCGTGAGTTGCTTAATCAGAAGGTTCAGTGTATGTTTTGCAATTTGATATTGCCAACCACTTCAATACATAGTCTCCAAGTACATAAATTCAGCCATTTACCATATAAAAAATGGATGAGCTGCAAACTTTGCTTTAATTCATTCAATTCGAATTGCGACATCATTCAGCATTTGGGTATTACGCATCATTTGGTTGCGGAAACTGCGAAACAAGCTCCTGTTTCCGATGTAAACAATGATGAGGACAGTCAAGAAGCTTATGGGTTTGATAGCGCTGTTGATTCTTTCGGCGTTTCAGGTGACGATAATGATTATGGCGGTGGAGTTAGTGGCGGTGGCAGTTATGGGGCTTCCGATAGAAAAAATATTCCTCCTCTTCTAGACTCCCAATCAGTAAAATATGATGATCGCGACGTGTTCGAACAACATATAACGTACATTTGCCCAGCATGCGGTAAGGAATATAATGATAAGAAAGTATGGCGCAAACACATTGTAGAAATTCATAAGCTGGgtgagctggaaaatttaaattttgaaaacataaaTGACCGTCAGCTGAAATGTAGGGAATGTGATAAGATAATAACAAATGCATATGGCATACAGAACGCCCAACAGCATCGTATGACCCACTTACAATATAAATCATTTGCTAAGTGCCGTTTATGTCGCAAAACTTATACCGATCGCAAGGGCTTAATAAAACACTTGAGAAATTCCCATAAGCTGGGTATACGAGTGGGTGTAGGCCAAACTACTCCAGTACCAGCCACCACAAGTTATAGTGGATCTGGTAGTGTTGCTACCTTTAAACCATTTGTCAAGAAACCCTACAAGATTGCTCACTATCCACCTAAAGAAATTGTTAGATTGTCAAATTATACCTATGAAATTGTACATTTAATCGAagatgatgacgatgacgatgatGTCACTATTACGGGTGGTTATGATTTTGCCAAAGGTGATGCTCATTTATATAGAAACAATTCGCCGTATAGTACACCTTCGAAGAAACTTCCCAATATGGAACAAATAACCAGGCATAAGTGTGTAGACTGCGGCACTATATTTCCTACACCACAATCTCTACAACTTCACATTCGAAAAGAACATGATTTTGTTGATTATCGAAATTCTCCCACTACCCAAGCGGCTCGAAATGAGGAAAAATCAAATGATGCCGATGATTTGTTAGTTCCCAGTAGGAATGTCGAAGTCCAACCGGAAAACCATACCACAATGGAGGGCAACTTTATATATCTGTGTCCCCAGTGTGGTGTAGAATTCCGTTCGCAAGTACAGTGGCGACGTCACATTAATATCGAGCATAATTTCGATAAACGCAGCTCTTTAGGCTTTAGACCTTTGGATAAATTTCGCTATCAGTGTAAAATTTGTAAAGACACAGTAACGAGCTCGAAACTTAAGGGACTGCAGGATCATAAATTTAGACATTGTCCATATAAACTCTACTTGAAATGTCTACTTTGCGGCCAATCGTACAATCATAAACCTAATATGATAGCGCATTTACGACAAAGACACAATATTGTGGAAGTTACAGATGGCGCAGCAGGAGCAGGATCGTCTTCCACGGATCATACGCAACCCAGACATTCATCGAATTCAAACAATAAAGAATTCAATGATGCTCCAGCCAGACTCATACGATATCCTGATCCTACCTTCAATAACACAAATCGACCACCGGGCTTAAAGACGGTCGAAGATGTTATATCATTTCATAACGCTGTCGATCATGAATCGATTACGTACCGATGTCCATCGTGTAATAAACATTTTGATTCGCATGTGTTTTGGCGCAAACACATTGTAGACGAACATAATCTGAATAGTAGAGAAGGTTTGAATTTCCGCCAATTGGATGAACACCATTATATTTGTTTGCAATGCTATAAACGTGTTACGGTCACTCACACCAAAGGCGCAATCGGTCAACTGCAATCGCATAAATTTAGACATTTGCCTTACAAATCATTCCGTTGTACTGCCTGCGATGGAGAATTTGTACGCaaacaaatgtttttcaaaCACTTGGATAAAAATACCAACAAATGCTCTGGCATAAATCCAGATAACAGCTTCGGCGATGCTGCCGATAGTAGCACAGCTCCAAATAACAATGACGAAGATGGCGCTGATGACTTGAATTCTACAACAACCGACAAAACTGGTTCTTCTTCAACAAAATTCTCTTGGCCCACGCGCTCCTCACTGCCGGCCCAATCGACAAGTACTGCTAATAATGAATCAATATCAGATAATCAGGGCTGCTTTACTCTAAACTGTCCACAGTGTGGAGCAGATTTCGAAACGACACGTGGTTGGCGGGAACACATCAATATTGAACACAATCTCAACAACAGAAccgttttaaatttcaaaaaaattagtgCCAAACTCCACCTGTGTTTGGAATGCAACGAACACGTGAATGGTAGAAAACTGCGTGATCTGCAAGTGCACAAGTTTAAACATTTACCGTACGGCGCCTATTTGCATTGTCGTTTTTGCTccatgaaatatttccatatcAGTAACATGCAGgagcatttgaaaaataaacatcCGAATATGgtgcaaaaaatgaaaaactatgAAGATGATTGTGGTATTATAGACGAAGATGACGATGCCAACGTGGATGGCAGCAATGATGCAGATGTGGCACTGGATGGTGAAGGCGATGATAGTAATGCCGGCCTGGAAGACGGAATAGATATAGATTTGTTAGAGGCCGAAGCCGAAATTGAAGAAGTTGATCCTGATAATGTTGAATCTGATGAACAATATCTCTTAGGCTaa
- Protein Sequence
- MDNLEPWSMFGNDLMSDERNANEIEGSGEGGTDIPFSIPSPVQDMHVKEEPQEIADESFDDDNDNVPLHFLAEGNSRNNDSRTRNPEDDNALFDFGLESSNSQNRSFDYPNLEPEDKYYNAMIKFEDAIIYICPACGHEFSSQDAWKNHLNVNHLYNTRRGLNFIQIDKLYHECMECHKRIAMHSMENLLKHKFTHLPYRCSKCMVCKRQYKYRQDLMVHLRMNHRDDLIELLKKEHKNSKNSNSQPQTIRSILSRTESNSNRPSFSIGTVKENAKDVFDNIEVKNELINEDEDDTMGEDSQPPPAKRPARDLPTFLEDGSTNGSANDQPPTSRSNKPAAGDEIDVSLEEYILFTCPQCGTECETQAQWRQHIEFVHEFGTRRGLNFRELLNQKVQCMFCNLILPTTSIHSLQVHKFSHLPYKKWMSCKLCFNSFNSNCDIIQHLGITHHLVAETAKQAPVSDVNNDEDSQEAYGFDSAVDSFGVSGDDNDYGGGVSGGGSYGASDRKNIPPLLDSQSVKYDDRDVFEQHITYICPACGKEYNDKKVWRKHIVEIHKLGELENLNFENINDRQLKCRECDKIITNAYGIQNAQQHRMTHLQYKSFAKCRLCRKTYTDRKGLIKHLRNSHKLGIRVGVGQTTPVPATTSYSGSGSVATFKPFVKKPYKIAHYPPKEIVRLSNYTYEIVHLIEDDDDDDDVTITGGYDFAKGDAHLYRNNSPYSTPSKKLPNMEQITRHKCVDCGTIFPTPQSLQLHIRKEHDFVDYRNSPTTQAARNEEKSNDADDLLVPSRNVEVQPENHTTMEGNFIYLCPQCGVEFRSQVQWRRHINIEHNFDKRSSLGFRPLDKFRYQCKICKDTVTSSKLKGLQDHKFRHCPYKLYLKCLLCGQSYNHKPNMIAHLRQRHNIVEVTDGAAGAGSSSTDHTQPRHSSNSNNKEFNDAPARLIRYPDPTFNNTNRPPGLKTVEDVISFHNAVDHESITYRCPSCNKHFDSHVFWRKHIVDEHNLNSREGLNFRQLDEHHYICLQCYKRVTVTHTKGAIGQLQSHKFRHLPYKSFRCTACDGEFVRKQMFFKHLDKNTNKCSGINPDNSFGDAADSSTAPNNNDEDGADDLNSTTTDKTGSSSTKFSWPTRSSLPAQSTSTANNESISDNQGCFTLNCPQCGADFETTRGWREHINIEHNLNNRTVLNFKKISAKLHLCLECNEHVNGRKLRDLQVHKFKHLPYGAYLHCRFCSMKYFHISNMQEHLKNKHPNMVQKMKNYEDDCGIIDEDDDANVDGSNDADVALDGEGDDSNAGLEDGIDIDLLEAEAEIEEVDPDNVESDEQYLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00742345;
- 90% Identity
- iTF_00901024;
- 80% Identity
- -