Basic Information

Insect: Linnaemya vulpina
Gene Symbol: -
Assembly: GCA_963675445.1
Location: OY776278.1:83602660-83607881[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0001 0.012 17.2 1.6 1 23 338 360 338 360 0.93

2 9 1.8e-08 2.1e-06 29.1 2.4 1 23 366 388 366 388 0.98

3 9 0.00026 0.031 15.9 0.5 1 23 394 416 394 416 0.98

4 9 7.6e-06 0.0009 20.8 1.0 1 23 422 444 422 444 0.97

5 9 3.8e-05 0.0045 18.6 1.4 2 23 531 552 530 552 0.96

6 9 3.9e-09 4.7e-07 31.1 1.6 1 23 558 580 558 580 0.98

7 9 0.0024 0.29 12.9 0.7 3 23 588 608 586 608 0.98

8 9 0.0002 0.023 16.3 0.8 1 23 614 636 614 636 0.99

9 9 0.021 2.5 9.9 1.1 1 23 643 667 643 667 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0001	0.012	17.2	1.6	1	23	338	360	338	360	0.93
2	9	1.8e-08	2.1e-06	29.1	2.4	1	23	366	388	366	388	0.98
3	9	0.00026	0.031	15.9	0.5	1	23	394	416	394	416	0.98
4	9	7.6e-06	0.0009	20.8	1.0	1	23	422	444	422	444	0.97
5	9	3.8e-05	0.0045	18.6	1.4	2	23	531	552	530	552	0.96
6	9	3.9e-09	4.7e-07	31.1	1.6	1	23	558	580	558	580	0.98
7	9	0.0024	0.29	12.9	0.7	3	23	588	608	586	608	0.98
8	9	0.0002	0.023	16.3	0.8	1	23	614	636	614	636	0.99
9	9	0.021	2.5	9.9	1.1	1	23	643	667	643	667	0.95

Sequence Information

Coding Sequence: atggCTATAAACTTTTCCGCTTCGTTTGCGGCCTGTATAGCAGCGGGTCTTAAAGTGCCACGTCAGATAATGTACTGCATCACTCAGGATACGGGGCAGCCGTATGTGCTCTACAAAGACTCGCAAGAAGCCGAGAGAAATGCAGCTGCTATTGGCGGCTCGGCTACACAATGGGGTAGTGAAATGTATCCGGGCATACAGCAACAGGCCCAAACTCATCTAAGcgcacaacagcaacaacaaaatgcagCTGCGCAAATTGCGGCAAATGGTCAGTCAGCAGCGGCAAATGGACCACAGCCCACATCACCCAACGGTGATCACAATGTTCGAGAAAATGGTGGAGACGGTGGTGGTGGTGGGACAGGAGGTGCGGGTGGTGTACGACAACAAGGCTCACCCTCGACAAGTCCTTATCCTCCACAACAGCAGCAGCGGGGGAATGGTGGTGAGGATGATGTGAATATGAATCAGGCGTCTGGTCTCCAACATCAAAATCCCAGCCAACAAACAAATCCAAACCAAAGCACAAATGATCCGCAACAGCATCAGCAACAAAACGGCAGTGCTGCAGGTTCTGCAGACAATCCAGCGGGGAATAACCCCCATGTGCAACAAAATGGCCAAACTAACGATCACAGTAATTTTCCTACAGCAAACGGTGAACTATCCGGCTATTATGCACCAAGACATCCGGGTCAGGGGGCGTTAATGGCACCGCCCGGCTTTCCACCTCTGCACTATCTTAACAAGCCCGTGCTGCCGGGTCTTAACGGCAGCATGGATCAAAGTGCGACCAATGGACCTTCGAATGGTCTGGAGGGCTACACCCTGCCCGAACTGTTACCCGGACAAAATGGCTCGGCCAATAGTAACAACCAACAGAATAGCTCCAATCACAATGCAGCAAATACGAATGGCTCCGGCGGACGTCATCCCACCTCAAGCAGCAATAACAATTCAACGTCAGGCAGTCATAAACCTCCTAAACCTCACAGTGACTTAAGGCTATTCAAGTGTCTGACATGCGGCAAAGATTTCAAACAGAAAAGTACCCTGCTACAGCATGATCGCATACATACAGATGCACGGCCATATCCATGCTCGGAGTGTGGCAAACGTTTTCGACAGCAATCACATCTGACTCAACATTTACGTATACACGCCAATGAAAAGCCGTTCACTTGCGGCTATTGCAATCGAGGCTTTAGACAGCGGGCGATACTGAACCAGCATGTTCGCATCCATTCGGGTGAGAAGCCCTTTGCGTGTCCCGAGTGCGGCAAGCACTTTCGCCAGAAGGCCATCCTTAATCAACATGTGCGAACCCACCAAGATGTGTCTCCAcatcttatatttaaaaatggaCCCCATCCCACACTATGGCCCCAAGACGTGCCATTTCCGGGCGATGAAAACGACACGAAAAATGGTATTGCCGGCGATGGTTATCACGATGAGGATTCTCAAGGTGGTCAAGATGGTGGTATACACTATCCTGCATACTTTAAAGATGGTAAAGgtCAAAAAATCTTACCCGATGTTTTATCACACATTGGCATCCGTCCGGCTAATATGCCACTGTATGTACGTTGTCCCATTTGTGATAAGGAATTCAAACAGAAGACCACACTGCTACAGCATGGTTGCATACATATCGAATCGCGTCCATATCCTTGTCCCGAGTGCGGTAAACGATTCCGTCAGCAGTCACATTTGACGCAACATTTACGAATACATACCAATGAAAAACCATTCGGTTGTCTTTACTGTCCGCGTTTCTTCCGTCAAAGAACTATATTGAATCAGCATATTCGCATACATACCGGAGAGAAACCCTACAAATGTGCCCAATGTGGTAAAGACTTCCGCCAGAAGGCCATTTTGGATCAGCATACACGGACGCATCAGGTAGGTGATCGTCCATTTTGTTGTCCTATGCCAAACTGCCGTCGACGTTTCGCTACTGAAAATGAAGTAACCAAACACATTGATAATCACATGAATCCAAGTGCGACAAAGACACGGCGGGCCAATAATACGAACAGTAATACAACACACTCAGCGGCCGCAGTGGCCACTGCTGCAGCTGCTGCCGCGGCCAATCATTTAATGAATGAAACCAAAAATGCAGCGGCACAACAGTTtctaaacaacaacaatccAGTCACACAGCCGggtgataataaaaacaatatattgccGCGTTCCATGGTAGGTGGAGGAGCGAATACAGGTTCACAAGTGAAAAATGAACTATACTTTCCTCAGTGCTATGGGCCGCCATTTCAGCATCCCTTTCAAGGTCAGCCCCAAGCAGCTCATGCAGGTCCCGTACAACCAGCGGTATCGGTAAGCGTAGCAAATTCAGGGCCACCAGGTGTAGTGGTACAGCAAAATGCTGGTAGTTCGGTTGTGGCTCAGTGA
Protein Sequence: MAINFSASFAACIAAGLKVPRQIMYCITQDTGQPYVLYKDSQEAERNAAAIGGSATQWGSEMYPGIQQQAQTHLSAQQQQQNAAAQIAANGQSAAANGPQPTSPNGDHNVRENGGDGGGGGTGGAGGVRQQGSPSTSPYPPQQQQRGNGGEDDVNMNQASGLQHQNPSQQTNPNQSTNDPQQHQQQNGSAAGSADNPAGNNPHVQQNGQTNDHSNFPTANGELSGYYAPRHPGQGALMAPPGFPPLHYLNKPVLPGLNGSMDQSATNGPSNGLEGYTLPELLPGQNGSANSNNQQNSSNHNAANTNGSGGRHPTSSSNNNSTSGSHKPPKPHSDLRLFKCLTCGKDFKQKSTLLQHDRIHTDARPYPCSECGKRFRQQSHLTQHLRIHANEKPFTCGYCNRGFRQRAILNQHVRIHSGEKPFACPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGPHPTLWPQDVPFPGDENDTKNGIAGDGYHDEDSQGGQDGGIHYPAYFKDGKGQKILPDVLSHIGIRPANMPLYVRCPICDKEFKQKTTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPFGCLYCPRFFRQRTILNQHIRIHTGEKPYKCAQCGKDFRQKAILDQHTRTHQVGDRPFCCPMPNCRRRFATENEVTKHIDNHMNPSATKTRRANNTNSNTTHSAAAVATAAAAAAANHLMNETKNAAAQQFLNNNNPVTQPGDNKNNILPRSMVGGGANTGSQVKNELYFPQCYGPPFQHPFQGQPQAAHAGPVQPAVSVSVANSGPPGVVVQQNAGSSVVAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01398770;
90% Identity: iTF_00435811;
80% Identity: -