Lvul018679.1
Basic Information
- Insect
- Linnaemya vulpina
- Gene Symbol
- -
- Assembly
- GCA_963675445.1
- Location
- OY776278.1:22206637-22208493[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-07 0.00027 21.8 0.0 5 38 395 428 393 432 0.92 2 4 4.6e-14 1e-10 42.3 0.0 5 44 449 488 447 489 0.92 3 4 0.022 50 4.9 0.0 27 38 518 529 514 535 0.88 4 4 1.2e-14 2.6e-11 44.2 0.0 4 41 557 594 557 596 0.92
Sequence Information
- Coding Sequence
- ATGAATCATTTAAAGTGGATGGGCCATTCGGCTACAATATTAGATATACATAAAAATCTACGAGCAGATTTAAAAAGCTGTGAAGTAACTTTGGTGGCCAAGGGACATTGTGTAAAAGCCCATCGTTTTGTTTTATCCTCTTGTAGCGACTTGCTACGTTGTCTTTTGACTGATGTACCCATTGGACAAGAATGTTGCCTTATGATTCCCGATATTAAAGGCTACTTGCTGGATAATGTtttagcttttatatatttaggagAATGTTCTTTATCCTCCACAAATTTGTCAGAGTTTTTGGAAGCCATTAATGTATTGGGCATTAAAAGTGCCATAAGTTTTGAATGCAATACAAATGCTTTGCAGACAGCCCAAAGTTCAAGTCATAGTACCATTACTCTGGATAGCAACACAACTATGGCGCCTGTAACTGCAATATTGCCTGACTCGCAGATACCAGTTGGCACTTCAGGCGACTCATTGCAACAGGAAGAAATGATTGAAAACCAAACTGTAATTCCGAATGAAGCTCATATTTCTAGTTCTAATAATGGAAATAGTTCTGCTGCAACTAGAGAACTTGACTTTTTAGATGTATATCATGAACCTCAACATAAAATAACATACTCAATAGAACATGTTCCGGGTTCTACAGCTGGCaacgaatttattttaactgaaaattctGGTACTTTCACCCTAACCCATAGTGGTAAACTAGAACCTAATTCATCACCGGCAGAATCCACCAACATGGAAATTACGGATGATGATGGTTGTGATACACATATTATAGAAGAATACAGCAGCAGCGATGAACCTTTAATTCAATTAGGTGAAAATGTACAAGACCAACAAACGATTACAGTATCTCAGGCTTTAACACAACATCACCAACAACAGACAACACCACTCGTCAcagcaccaacaacagcaacatctaTTATACAAGTAAAGCCGAAATTGAAAACCCTTAAATTAAAACATCCACAGGGTGCTCAAAGGATGTTAACCAAAATAGAACAACTTTCTGAAGATACAGGCAGTGACGATCCCATATCAATATTACAAACGTCAAACGAAAGTTTTACTTTGCTTAAAGACGCTTCTATAATATCTACAAGTAACACTAGCCATGATGAGTCAAcagatttttctataaataattcGGAAACATCTGCTATTGAATTGGCCTATCAAGCAATGATCAATGAGAGCATGTCTTTGCCTAAAGCTGCCGACAAATTTAATGTTTCAAAAGCGGAACTTTGGCGAAGAGTTCGTTGTACTGGCGTTGAGCAactcaataaatcaattaaactCGATGCTGACAAGATTGACGTTATTGAATTAGCTAGTAAGGCTGTAATAAACGAGGGTTTATCATTACAAAAGGCCGCCATACGTTACGACATTTCGAAAACCGTACTCTGGCGTCGAGTCCGCAAGCATCCGCAGTATATGAAGACAGCACGTGAAAATCCCATAATAACAAAGGCCTACGAGAGACTTAAATCTGGTGAATCCCTTAAGAGCATATCTCAAGATTTAGATATACCCATGTCAACTTTACATCGGCATAAAGTTCGTCTCTCGCAAACTGGACAGTTGCCTGACTTTGTTACGTGCAAAAAACGGGATAGCATGTCAAAAGATGATCTTAAACTAAAGCTATCTAAAGCTGTACATGCTTGCGTACACGAAGGGATGTCGCAAAATCATGCtgctaatttatttcaaatttccaaaaGCACATTATGGAGACATCTGCAAAAACGAGTAGCAGAAGCAGAAGCAGCTGAGAGCGAGTCTATGGGCGAAGAGGACGAAATTAAGCAAGAAGTCATTCTTTCATAA
- Protein Sequence
- MNHLKWMGHSATILDIHKNLRADLKSCEVTLVAKGHCVKAHRFVLSSCSDLLRCLLTDVPIGQECCLMIPDIKGYLLDNVLAFIYLGECSLSSTNLSEFLEAINVLGIKSAISFECNTNALQTAQSSSHSTITLDSNTTMAPVTAILPDSQIPVGTSGDSLQQEEMIENQTVIPNEAHISSSNNGNSSAATRELDFLDVYHEPQHKITYSIEHVPGSTAGNEFILTENSGTFTLTHSGKLEPNSSPAESTNMEITDDDGCDTHIIEEYSSSDEPLIQLGENVQDQQTITVSQALTQHHQQQTTPLVTAPTTATSIIQVKPKLKTLKLKHPQGAQRMLTKIEQLSEDTGSDDPISILQTSNESFTLLKDASIISTSNTSHDESTDFSINNSETSAIELAYQAMINESMSLPKAADKFNVSKAELWRRVRCTGVEQLNKSIKLDADKIDVIELASKAVINEGLSLQKAAIRYDISKTVLWRRVRKHPQYMKTARENPIITKAYERLKSGESLKSISQDLDIPMSTLHRHKVRLSQTGQLPDFVTCKKRDSMSKDDLKLKLSKAVHACVHEGMSQNHAANLFQISKSTLWRHLQKRVAEAEAAESESMGEEDEIKQEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00199788;
- 90% Identity
- iTF_00899458;
- 80% Identity
- iTF_00900753;