Ltes040129.1
Basic Information
- Insect
- Linnaemya tessellans
- Gene Symbol
- -
- Assembly
- GCA_951800035.1
- Location
- OX637535.1:35846579-35848435[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.2e-07 0.0013 20.2 0.0 5 39 395 429 393 433 0.91 2 4 6.3e-14 1.5e-10 42.3 0.0 5 44 449 488 447 489 0.92 3 4 0.03 74 4.9 0.0 27 38 518 529 514 535 0.88 4 4 1.6e-14 3.9e-11 44.2 0.0 4 41 557 594 557 596 0.92
Sequence Information
- Coding Sequence
- ATGAATCATTTAAAGTGGATGGGCCATTCGGCCACAATATTAGATATACATAAAACTCTACGATCAGATTTAAAAAGCTGTGAAGTGACTTTGGTGGCCAAGGGACATTGTGTTAAAGCGCATCGTTTTGTTTTATCCTCTTGCAGCGACTTGCTACGTTGCCTGTTAACTGATGTTCCCATTGGGCAAGAGTGTTGCCTTATGATCCCCGATATCAAAGGGCATTTGCTGGATAATGTTTtagcttttatatatttaggagAATGCTCCTTATCCTCTACAAATTTGTCAGAGTTTTTGGAAGCCATCAATGTATTAGGCATTAAAAGTGCCATAAGTTTTGAATGTAATACAAATGCTTTACAGTCAGCCCAAAGTACCAGTCACAGTACGATTACTCTAGATAGCAACACAACTATGGCGCCTGTAGCTGCGATATTGCCTGATGCGCAAATGCCAGTTGGCAGTTCGGGCGAGTCATTGCACCAGGAGGAACTGATTGAAACTCAAACTGTAATCCCGAATGAAGCGCATATTTCAGGTTCTAATAATGCAAATAGCTCTGCTGGAACTAGAGAACTTGACTTTTTAGATGTATATCATGAACCTCAACAcaaaataacatattcaataGAACATGTACCGGGTTCTACAGCTGGCAACGAATTCATTTTAACGGAGAATTCTGGTACTTTTACACTAACCCATAGCGGTAAATTAGAACCAAATACATCACCGGCGGAATCAACCAACATGGAGATCACAGAGGATGATGGTTGTGATACACATATTATAGAAGAATACAGCAGCAGCGATGAACCTTTAATTCAATTAGGTGAAACTGTACAAGAACAACAAACAATAACAGTATCTCAGACCTTAACACAACATCAGCAACAACACACTTCTCCACTTGTTACAGCAGCTACGACCGCAACATCTATTATTCAAGTGAAGCCGAAATTGAAAACCCTCAAATTAAAACCGCAACAGGGTTCTCAAAggataataaccaaaatggaaCAACTTTCTGAAGATACAGGCGGTGACGATCCCATATCAATATTACAAACATCAAATGAAAGTTTTACATTGCTTAAAGATGCTTCTATAATATCTACGAGTAACACTAGCCATGATGAATCAACAGATTTTTCTATAAATAACTCGGAAACACCTGCTATCGAATTGGCCTATCAAGCAATGATAAATGAGAGCCTGTCTTTGCCAAAAGCCGCCGACAAATTTAATGTTTCAAAAGCGGATCTTTGGCGGAGAGTGCGCAGTACTGGCGTTGAGCAGCTCAACAAATCAGTTAAACTCGATGCTGAAAAGATCGACGTTATTGAATTAGCTAGTAAGGCAGTAATTAATGAGGGTTTATCACTACAAAAGGCCGCTATACGATACGATATTTCTAAAACCGTGCTCTGGCGTCGAGTTCGCAAACATCCGCAGTATATGAAGACAGCTCGCGAAAATCCAATAATAACAAAGGCATACGAAAGACTAAAATCAGGCGAGTCCCTTAAAAGCATATCTCAAGATTTAGATATACCCATGTCAACTCTGCATCGCCATAAAGTGCGTCTCTCCCAAACTGGACAGTTGCCAGACTTTGTTACATGCAAAAAACGTGATAGCATGTCAAAAGATGATCTTAAATTAAAACTATCAAAGGCTGTACATGCTTGCGTGCACGAAGGAATGTCGCAAAATCATGCTgctaatttatttcaaatttccaAAAGCACATTATGGCGACATCTGCAAAAGCGGGTAGCAGAAGCTGAAGCAGCTGAGAGCGAGTCTATGGGTGACGAGGATGAAATTAAACAAGAAGTCATTCTATCATAA
- Protein Sequence
- MNHLKWMGHSATILDIHKTLRSDLKSCEVTLVAKGHCVKAHRFVLSSCSDLLRCLLTDVPIGQECCLMIPDIKGHLLDNVLAFIYLGECSLSSTNLSEFLEAINVLGIKSAISFECNTNALQSAQSTSHSTITLDSNTTMAPVAAILPDAQMPVGSSGESLHQEELIETQTVIPNEAHISGSNNANSSAGTRELDFLDVYHEPQHKITYSIEHVPGSTAGNEFILTENSGTFTLTHSGKLEPNTSPAESTNMEITEDDGCDTHIIEEYSSSDEPLIQLGETVQEQQTITVSQTLTQHQQQHTSPLVTAATTATSIIQVKPKLKTLKLKPQQGSQRIITKMEQLSEDTGGDDPISILQTSNESFTLLKDASIISTSNTSHDESTDFSINNSETPAIELAYQAMINESLSLPKAADKFNVSKADLWRRVRSTGVEQLNKSVKLDAEKIDVIELASKAVINEGLSLQKAAIRYDISKTVLWRRVRKHPQYMKTARENPIITKAYERLKSGESLKSISQDLDIPMSTLHRHKVRLSQTGQLPDFVTCKKRDSMSKDDLKLKLSKAVHACVHEGMSQNHAANLFQISKSTLWRHLQKRVAEAEAAESESMGDEDEIKQEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00199788;
- 90% Identity
- iTF_00899759; iTF_00900753; iTF_00900501;
- 80% Identity
- iTF_00899759;