Lvul034360.1
Basic Information
- Insect
- Linnaemya vulpina
- Gene Symbol
- foxp1b
- Assembly
- GCA_963675445.1
- Location
- OY776281.1:12758097-12766680[+]
Transcription Factor Domain
- TF Family
- Fork_head
- Domain
- Fork_head domain
- PFAM
- PF00250
- TF Group
- Helix-turn-helix
- Description
- The fork head domain is a conserved DNA-binding domain (also known as a winged helix) of about 100 amino-acid residues. Drosophila melanogaster fork head protein is a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors [1]. Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [1, 2, 3]. The fork head domain binds B-DNA as a monomer [2], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.9e-10 8.1e-07 30.3 0.0 38 81 50 88 38 95 0.82 2 3 2e-06 0.0041 18.4 0.0 46 82 146 177 136 183 0.85 3 3 4.4 9e+03 -1.9 0.1 68 82 285 299 281 304 0.75
Sequence Information
- Coding Sequence
- ATGAACTCCCTAAACCATGATTTGTACTCGCAACTTAAGTATAATGTGACTTCAGCACTATCTGTGCGCGTTACGTGTCTTCTTATCAAAGCTAGAGGAGGATTGTTGAACTTAATGGCAAATCATTTAGTAATAACACTTCAACCATATGTACAGTCTGCAATCTTAATCAAGTTGAAGAATGCGGTTAGACACAATTTGTCATTGCACAAGTGTTTTATGAGGGTTGAAAATGTTAAGGGTGCTGTATGGACTGTTGATGAACTGGAATTTTACAAACGTCGCCCACAGCGTTCAACGGCTGCCGCCGTTGTGTTCTCGTCATCTTCAACGTCATCATCATCTACGGCGAATGCAGCATCAACATCCCCGTCAATTGTTGGCCTAATGAACAGCAGCAATGGCTTTGATTTTGGTCCCTGCTTGAATATGCAAGGCGGATATAATGCTATACGTACGAATTTGTCATTGCATAAATGCTTTGTTCGCTACGAAGATGACTTTGGCTCCTTTTGGATGGTTGATGACAGTGAGTTTGTTAAAAGGCGTCATCTGTCGAGAGGCCGTCCGCGCAAATATGAGCCGTCTTCATCGCCCAATTCGAATTCACAACAGGTTGGCAAATCAATGGCCTCGGCATCGTCTAACGATTTAGTCGATGGCGGAAGTGTTGTAAACGACACAATTGCCAGTTCCAGTCCAGATTCATCGACTGCTGGCTCTTCGTCACGTCAACGATGCGCCAGTAGTGGAAGCAACCTGTACCATAGATCTGTTAATGAAAAAAACGGCGGTAGCGACGACTATGATATCTGCGAAGTTAGCCAAAGAAGTCCAGCCGGGTGTAAAAACCACGCACAAAGTGGAAGAAGGGAATACTGGCACTTAAAGCAGCGCCCTCATATGCAAAAATCTTTAATTGGTGTCgcaacaaaatcaaatattaattcaCTTATTGATCATAGAATCATTAGTACAACGAATGGTGAGGGCGGTGTTATAGTCACAGAGAATGGTCCCGGCGTCGGCGGCATTGATGGTATTGGCTCCGTTGGAAGCTTAGGCGTTGATAATCAGAACGGTGATATAAATATTACCAACACGGTTGTTGAAACGGACCACCCTAATGGCTACAGCTTGCAAACACAGTAA
- Protein Sequence
- MNSLNHDLYSQLKYNVTSALSVRVTCLLIKARGGLLNLMANHLVITLQPYVQSAILIKLKNAVRHNLSLHKCFMRVENVKGAVWTVDELEFYKRRPQRSTAAAVVFSSSSTSSSSTANAASTSPSIVGLMNSSNGFDFGPCLNMQGGYNAIRTNLSLHKCFVRYEDDFGSFWMVDDSEFVKRRHLSRGRPRKYEPSSSPNSNSQQVGKSMASASSNDLVDGGSVVNDTIASSSPDSSTAGSSSRQRCASSGSNLYHRSVNEKNGGSDDYDICEVSQRSPAGCKNHAQSGRREYWHLKQRPHMQKSLIGVATKSNINSLIDHRIISTTNGEGGVIVTENGPGVGGIDGIGSVGSLGVDNQNGDINITNTVVETDHPNGYSLQTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -