Basic Information

Transcription Factor Domain

TF Family: Fork_head
Domain: Fork_head domain
PFAM: PF00250
TF Group: Helix-turn-helix
Description: The fork head domain is a conserved DNA-binding domain (also known as a winged helix) of about 100 amino-acid residues. Drosophila melanogaster fork head protein is a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors [1]. Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [1, 2, 3]. The fork head domain binds B-DNA as a monomer [2], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 3.8e-17 1.2e-13 52.7 0.1 29 83 10 61 3 66 0.87

2 2 1.6 5e+03 -0.5 0.1 44 55 148 159 127 164 0.68

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	3.8e-17	1.2e-13	52.7	0.1	29	83	10	61	3	66	0.87
2	2	1.6	5e+03	-0.5	0.1	44	55	148	159	127	164	0.68

Coding Sequence: atgtttgaaacaaaaattactcTAGTTTTCCATAATTTCAGTGATCGTTTTCCTTTTTACAAATCGAACGATGATCGCTGGAAGAACTCGGTGAGACACAATCTGTCAATTAATCCCCATTTTCGCAAAGGTCATAAAGCTCCACAGGGTGCTGGTCATCTGTGGACAATATCTAGTGGAGATTCAGCGGAAAATGTTCTAGCCTGGGAGCATAAAAAGCAACGTTTggatttgtttttcaaaatggAATCCATTAATCGCGAACGTTTGGAACAGCATCACCAGAAACAACAACAGGAACGTTTATTACAAAATGGCGGTGGAAAACACAAGCAGCATATCGGTTGCCAGCAAGATCAATGTTTATACGATGAAGCAGCCGTGGCAGCGGCAGCCATACAACAGGAAATGTTACAGCAAAATCAAAATAACAACGATgcttcaatacaaaatcaaaattcagTACAACATGTCGTGGACTCGTCGGCGGCGGTAAATGTTTTACACGATTTACCCTACAATGATCTGTTAACTGACGAGGAGTTGCGCAAGACGGCGGGACAAATTTTGAATGGCATTCACCGAGAAGTGGAAGTGCAATCGGTTAATCAAACCTTAATTGGCACGTATCAGGATGTGTTGCTGGATAATGATTATCTCAATCCCATACACAAAGATGTGGTCGTGAATGAGAGCGGCCTACGTCATTCGTCGCAGTCCACAGTCCTTTCTACTCACTGCCATAGCAATCACTCGTCATCCTCTGGTCCATATTATGTTACCGAAATCGATCCCATGGAATTGGGCATACAAATATCCAGCAGTCACCATCATCACCACCATCTCCAGCCTAATCATCACAATACAGATCCTTCAAACTCCGTGTCAGAAGATTCCGATGCGGTGCTATTTAATGatgatttcaatttaaattattttacttataatCCAGCCAACGACATTGTTGCTTGA
Protein Sequence: MFETKITLVFHNFSDRFPFYKSNDDRWKNSVRHNLSINPHFRKGHKAPQGAGHLWTISSGDSAENVLAWEHKKQRLDLFFKMESINRERLEQHHQKQQQERLLQNGGGKHKQHIGCQQDQCLYDEAAVAAAAIQQEMLQQNQNNNDASIQNQNSVQHVVDSSAAVNVLHDLPYNDLLTDEELRKTAGQILNGIHREVEVQSVNQTLIGTYQDVLLDNDYLNPIHKDVVVNESGLRHSSQSTVLSTHCHSNHSSSSGPYYVTEIDPMELGIQISSSHHHHHHLQPNHHNTDPSNSVSEDSDAVLFNDDFNLNYFTYNPANDIVA

Sequence clustering based on sequence similarity using MMseqs2