Lhum010644.1
Basic Information
- Insect
- Linepithema humile
- Gene Symbol
- nfxl1
- Assembly
- GCA_000217595.1
- Location
- NW:1130413-1134788[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.1 6e+03 -3.3 1.1 15 19 145 149 144 149 0.81 2 18 0.5 2.8e+03 -2.2 0.7 4 10 180 186 180 186 0.92 3 18 5.8e-08 0.00031 20.0 15.1 1 18 194 210 194 211 0.98 4 18 1.5 8e+03 -3.7 1.2 6 10 237 241 236 241 0.85 5 18 8.6e-06 0.047 13.0 13.0 1 18 248 264 248 265 0.93 6 18 1.6 8.6e+03 -3.8 1.7 6 10 290 294 290 294 0.93 7 18 5.8e-05 0.32 10.4 11.0 1 19 300 319 300 319 0.92 8 18 0.00014 0.78 9.1 8.3 1 18 355 372 355 373 0.97 9 18 0.005 28 4.2 7.3 1 12 407 418 407 418 0.94 10 18 1.2 6.5e+03 -3.4 1.4 6 10 428 432 427 432 0.88 11 18 9.3e-08 0.00051 19.3 12.9 1 19 438 456 438 456 0.91 12 18 0.00014 0.77 9.2 9.4 10 19 505 514 502 514 0.90 13 18 0.0019 10 5.6 7.4 1 12 524 534 524 534 0.95 14 18 0.88 4.8e+03 -3.0 5.8 14 18 566 570 566 571 0.89 15 18 0.00092 5 6.6 7.3 1 12 607 618 601 618 0.79 16 18 2 1.1e+04 -5.7 3.4 14 18 631 635 631 639 0.59 17 18 0.00016 0.86 9.0 18.2 3 19 648 664 647 664 0.92 18 18 0.00079 4.3 6.8 12.8 1 16 709 723 709 729 0.87
Sequence Information
- Coding Sequence
- ATGGATGTCGCCTTCATTGCCGATTCGATAAGAAAGGAGATAGAAATAaattttaaaatgcagaaatttagaaaagctcaagtgcaaaataaattgtctaTTGAAAGACATTTGGAAGCCAACGCATCATTAAATTACTCTAGTGAAGAGGAAGATGAAACAAATGAGGAAGATGTCCAAAATGTAGTGGACAAAGTATTATCGGCATACCAGGGACAAGGCACAGATGCAGAAAAAGTGATATCATATCTAGTTAATTCTTTTCAATCTAGCAGTGCAGTTTGTTTGATATGTATATCAACTGTCAAAAAAATAGATCCGATTTGGAATTGCAACAAATGCTATGCATTTTTACATATGAATTGCATTTTACATTGGATTAATGACAGTTTGAGTTATAAACGGGCTAAAAATATTACTCCAATCTGGGCATGcCCAAAATGTCGTATGGAATATGACCAGGATCAGATTCCAAGATCATATGAatgtttctgtaaaaaaacTGCGGATCCTCCACATCAACCATGGATTATTCCACATTCCTGTGGCGAGAGCTGCGGCAAGCTCTTACAACCAGAATGCGGTCATAAATGTGTGTTGCTTTGTCATCCTGGTCCATGTCCACCATGTGCAAAGATGGTGTTGGTTAAATGCTACTGTGGCAAACTACCAGCACAGCCACGTCGTTGTAATGCTAAAAGCTGGAGCTGCCAAACTGTATgtgacaaaaaatatgaatcttgCTCACAcacttgcaataatttatgtcaTACTGAAGAATGTCCACCTTGTGAGGAAATTGTACTACTGAAATGTCGTTGCAAGAGCAGTCAAAAGGAAGGAAAATGCTACGAAAGTACATGGATCTGCGAGAAACCTTGtaagaaaagattttcttGTAATGTACACATTTGCGAGAGTACTTGTCATTCATCCGGCGATTGTGGTAACTGTCCCCTGGAGAAAAATAGATGTTGCCCATGTGGAAAGAAACGTTATGACGTTTCCTGCAGACAGCAGCAAGTGCCAACGTGTGGTGACACTTGCAGCAAATTGTTAGACTGTGGATCACATTTCTGCAACATGAGATGCCACACCGATCGCTGTGGTCAGTGTTTGGAAGTTATAACAAAAGCATGCAAATGTGGCAGCTATACAAAAGAGATCGCCTGTGTGAAAGAATTTCACTGCAACAAGAAATGCACACAGATGCGCTTGTGCGGCAGACATCTGTGTAACAGAAAGTGTTGCGATTGTATATTGAAGAACACATCCAATCCTTGCGAGAAGACGTGCGAGAACACGCTTAATTGTCGTAAGCACAAGTGTGCCGCTCCTTGTCACAGCGGCCCTTGCTATCCGTGCACCAGGACGGATGTCATACAATGTCGATGCGGCAGCAACAAGATAACAGTGCCATGCGGTaccaaaaaaagaattaagccACCATCATGTAATAAGTCCTGCAAGATTCCACCAATCTGTCATCATACCAAGAGGGAAACGCACAGATGTCACCAAGGCCCGTGTCCACCGTGCAAGAAAGTTTGCGGCTTGATATACAAGAGATGCGGTCATTCTTGCCCAGCTACTTGTCACACTAAAGTCTGGATGAAAGTCAGAGTGAACGGGGTAAAGGCGCAACCTACCGGCCCCTGGGAAAAACCAAAAGATGTTATGGAATTGAAAACCTTACCATGTCCACCGTGCGAAATTTCTGTGCCCGTGACCTGTTTCGGTGGTCACGAGACACAGCCTTGGCCATGCCACATGTCAAGACCAAGTTCTTGTGGCAGATTTTGCGGCCGATCACTGTCGTGCAAGAATCATACTTGCGAGTTGACTTGTCACAAAGTACAAGCTTCTGACGACGAATCTGGCAACGGTATTCCATGCATGGAATGTGAAAAGGAATGTCAATTCGCACGTCCAACAGGTTGCACGCATACCTGCCCGCAACCTTGTCATCCAGCACCATGTAAACCATGCAAGCAGTTAGTGCGAATCTCCTGCCACTGTGGTATTAGCACCCTTTACCGGCATTGTGTAAACCTGACGTCCGCAACAACTAAGGAGCGCGACGAATTGCTCAAATGTGGAAACCAATGTCCTAAAAATtATCCATGCGGCCATCGTTGTATTAACGATTGCCATCCGGGAGTATGCAAAGGCGGGGAAGAATGCAACAAGAAAGTCAGATTATGGTGTAAGTGTAAACGGATCAAGAAAGATTTTCTTTGTTCCTTTCTACAAAAGGAACAAATTACTGTAGAGTGCGACAATGTGTGTGAATCATTgaagaatgaaagaaaagagGCCCAAGAGGCTATGATAGCAAAGAAGCGAGAAGCGGAAGAATTGCGCAATCGGGAAGAGATcgaaaaattcgagaaaaagtTCAAGCCAcggcgaaagaaaaaagacaagAATGAAAACTCGAAACAGTCCCAAGAGAGTATGAGAAACAAATATTGGAGCATGTGGATTTTAGCGATTGCCATAAGTCTTATAGGTATTATAATAGTGTACGTGACTGCTCCTGATCTAAGTATACTTGGTCTGAGCTGA
- Protein Sequence
- MDVAFIADSIRKEIEINFKMQKFRKAQVQNKLSIERHLEANASLNYSSEEEDETNEEDVQNVVDKVLSAYQGQGTDAEKVISYLVNSFQSSSAVCLICISTVKKIDPIWNCNKCYAFLHMNCILHWINDSLSYKRAKNITPIWACPKCRMEYDQDQIPRSYECFCKKTADPPHQPWIIPHSCGESCGKLLQPECGHKCVLLCHPGPCPPCAKMVLVKCYCGKLPAQPRRCNAKSWSCQTVCDKKYESCSHTCNNLCHTEECPPCEEIVLLKCRCKSSQKEGKCYESTWICEKPCKKRFSCNVHICESTCHSSGDCGNCPLEKNRCCPCGKKRYDVSCRQQQVPTCGDTCSKLLDCGSHFCNMRCHTDRCGQCLEVITKACKCGSYTKEIACVKEFHCNKKCTQMRLCGRHLCNRKCCDCILKNTSNPCEKTCENTLNCRKHKCAAPCHSGPCYPCTRTDVIQCRCGSNKITVPCGTKKRIKPPSCNKSCKIPPICHHTKRETHRCHQGPCPPCKKVCGLIYKRCGHSCPATCHTKVWMKVRVNGVKAQPTGPWEKPKDVMELKTLPCPPCEISVPVTCFGGHETQPWPCHMSRPSSCGRFCGRSLSCKNHTCELTCHKVQASDDESGNGIPCMECEKECQFARPTGCTHTCPQPCHPAPCKPCKQLVRISCHCGISTLYRHCVNLTSATTKERDELLKCGNQCPKNYPCGHRCINDCHPGVCKGGEECNKKVRLWCKCKRIKKDFLCSFLQKEQITVECDNVCESLKNERKEAQEAMIAKKREAEELRNREEIEKFEKKFKPRRKKKDKNENSKQSQESMRNKYWSMWILAIAISLIGIIIVYVTAPDLSILGLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01476621;
- 90% Identity
- -
- 80% Identity
- -