Basic Information

Insect: Linepithema humile
Gene Symbol: ZNF236
Assembly: GCA_000217595.1
Location: NW:240113-255038[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.00067 0.042 13.7 2.1 2 23 181 202 180 202 0.97

2 27 0.0003 0.019 14.7 1.1 1 23 208 230 208 230 0.98

3 27 2.6e-05 0.0016 18.1 0.3 2 23 236 257 236 257 0.97

4 27 1.2 74 3.4 0.1 3 23 265 285 263 285 0.95

5 27 6.4e-05 0.004 16.9 0.7 2 23 296 317 296 317 0.98

6 27 8.3e-06 0.00052 19.6 1.6 1 23 338 360 338 360 0.99

7 27 2.4e-05 0.0015 18.2 1.0 1 20 366 385 366 388 0.95

8 27 3.8e-05 0.0024 17.6 1.3 1 23 394 417 394 417 0.96

9 27 0.00084 0.052 13.3 1.5 1 23 426 449 426 449 0.97

10 27 2.8e-06 0.00017 21.1 0.3 1 23 572 594 572 594 0.97

11 27 0.00077 0.048 13.5 1.2 1 23 600 622 600 622 0.99

12 27 0.097 6.1 6.8 4.6 1 23 628 650 628 650 0.98

13 27 9.4e-05 0.0059 16.3 2.7 1 23 654 676 654 676 0.98

14 27 0.0075 0.47 10.4 6.9 1 23 731 753 731 753 0.98

15 27 4.4e-05 0.0027 17.4 3.9 1 23 759 781 759 781 0.99

16 27 4.8e-06 0.0003 20.4 2.1 1 23 787 809 787 809 0.98

17 27 0.0016 0.1 12.4 10.1 1 23 815 837 815 837 0.98

18 27 0.16 9.7 6.2 1.2 2 23 1191 1212 1190 1212 0.93

19 27 1e-05 0.00063 19.4 2.7 1 23 1218 1240 1218 1240 0.99

20 27 0.053 3.3 7.7 1.1 2 23 1247 1268 1246 1268 0.96

21 27 2.6e-08 1.6e-06 27.5 1.4 2 23 1342 1363 1341 1363 0.98

22 27 7.8e-05 0.0048 16.6 5.0 1 23 1369 1391 1369 1391 0.99

23 27 3.3e-05 0.0021 17.8 3.0 2 23 1398 1419 1397 1419 0.96

24 27 7.5e-05 0.0047 16.6 2.2 1 23 1425 1447 1425 1447 0.98

25 27 1.9e-06 0.00012 21.7 0.6 3 23 1704 1724 1703 1724 0.98

26 27 5.8e-06 0.00036 20.1 4.2 1 23 1730 1752 1730 1752 0.98

27 27 5.5e-05 0.0034 17.1 7.6 1 23 1758 1781 1758 1781 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.00067	0.042	13.7	2.1	2	23	181	202	180	202	0.97
2	27	0.0003	0.019	14.7	1.1	1	23	208	230	208	230	0.98
3	27	2.6e-05	0.0016	18.1	0.3	2	23	236	257	236	257	0.97
4	27	1.2	74	3.4	0.1	3	23	265	285	263	285	0.95
5	27	6.4e-05	0.004	16.9	0.7	2	23	296	317	296	317	0.98
6	27	8.3e-06	0.00052	19.6	1.6	1	23	338	360	338	360	0.99
7	27	2.4e-05	0.0015	18.2	1.0	1	20	366	385	366	388	0.95
8	27	3.8e-05	0.0024	17.6	1.3	1	23	394	417	394	417	0.96
9	27	0.00084	0.052	13.3	1.5	1	23	426	449	426	449	0.97
10	27	2.8e-06	0.00017	21.1	0.3	1	23	572	594	572	594	0.97
11	27	0.00077	0.048	13.5	1.2	1	23	600	622	600	622	0.99
12	27	0.097	6.1	6.8	4.6	1	23	628	650	628	650	0.98
13	27	9.4e-05	0.0059	16.3	2.7	1	23	654	676	654	676	0.98
14	27	0.0075	0.47	10.4	6.9	1	23	731	753	731	753	0.98
15	27	4.4e-05	0.0027	17.4	3.9	1	23	759	781	759	781	0.99
16	27	4.8e-06	0.0003	20.4	2.1	1	23	787	809	787	809	0.98
17	27	0.0016	0.1	12.4	10.1	1	23	815	837	815	837	0.98
18	27	0.16	9.7	6.2	1.2	2	23	1191	1212	1190	1212	0.93
19	27	1e-05	0.00063	19.4	2.7	1	23	1218	1240	1218	1240	0.99
20	27	0.053	3.3	7.7	1.1	2	23	1247	1268	1246	1268	0.96
21	27	2.6e-08	1.6e-06	27.5	1.4	2	23	1342	1363	1341	1363	0.98
22	27	7.8e-05	0.0048	16.6	5.0	1	23	1369	1391	1369	1391	0.99
23	27	3.3e-05	0.0021	17.8	3.0	2	23	1398	1419	1397	1419	0.96
24	27	7.5e-05	0.0047	16.6	2.2	1	23	1425	1447	1425	1447	0.98
25	27	1.9e-06	0.00012	21.7	0.6	3	23	1704	1724	1703	1724	0.98
26	27	5.8e-06	0.00036	20.1	4.2	1	23	1730	1752	1730	1752	0.98
27	27	5.5e-05	0.0034	17.1	7.6	1	23	1758	1781	1758	1781	0.97

Sequence Information

Coding Sequence: ATGTCCACCAACATGCTGACGGAACAAAACGTAGTTTTGGAGTCAACTGACTCTAGTGATACGATGCCAATTGGTTTAATTACTACGGATGATGGTCATACACTTTTGGCGATGGGTgAATATGAAGATGGTACACTAAAAATCATGGCAGCTCCTATTGCATTAATGCCACAGAATAATATGGTATCTCCAACATTGGTAAAGACTGTGGAtggaaactttattttacattctCCTGTTTTCCAATTAAATGTGGAAGGTCTATCGGGGACTGGAATGCAACAAGCAAACCTACTACCGATGATACAACATCTTGAAAATGGACCTGGGATTATTGAGCAACTGAAGTTAGCGCAGAATGCAAATGAGTGTGCAGTTACAGAGCCTTTATCACCTATCAAAGCTGATAGCAATGTATTATTAGATAAAGAACAAGCAACAATCGACAATACTAACAGCGAATCCATGCCAGTATCTATACTAAGAAATATCTATAGGTCTCCGGGTAGACCGAAAAAAACAGGGAATACACAGTTCCTGAAGTGTGATATATGCAGGCAAGAATTCACTAAACGGATGTTGTACCGCAGACATATGCAAAATCACGCTGAAGAAAAGCCACATAGATGTCCAAAATGCTCAGcatcttttaatattccaACAAATTTCACGCTTCACATGGCAACGCATAATACCGGCGACCCAAAATGTCCCGAATGCGGTAGGAAATACGCCAGAATGGCGAGTCTCAAATCTCACATGCTGCTACACGAAAAGGAGGAGAATCTCTTCTGCACGGAATGCGAGGACGCTTTTTTGACAAAgGCTCAATTGGATGCGCATTTGAAGCTCCACGGGGAAAAGTGGGCGAACGAGGATGCGCGAAAGTGCAAGTTGTGCAACAAACAATTTGTGCAGCCCGCACTCTACCGTCAACATATCCGCGAACATTATAGGCAACAGACGAAGATAGCCAGGCAAACCAAGAGGGGAACGAAACATAAAACAGTGTACAAATGTACCATATGTTTGAAATTCTTCCAAAAACCGAGCCAACTGTTGCGGCATCTCAGGGTGCACACCGGTGAAAAGCCCTTCAAGTGTACCATTTGCAGCAGGGCGTTCACGCAAAAGAGCTCGCTGCAAATCCACACGTGGCAACACAATGGTGTTCGGCCGCACAGCTGCACCCTCTGCACCGCCAAATTCAGTCAAAAaggaaATCTAAAGGCGCATATTCTCAGAGTGCACAATACGGCAGAGGGTGAGCCAACGTATGCCTGTTCTTATTGCTCCTGCGTCTTCAAGAAGCTGGGCAGTTTAAACGGGCACATAAAACGAGTGCACACTAATGTTCTGGAGGAATCCGTTGTCAAGCTCTTGGAAACTAACTCCGTCGTATCGCCGGAAGCTGACATGCGTGCGACCGTTGACAGCGTAATATCGCAGTTGGCGTCTTTGGAATCCGCCGTGAACAATACCACGGATAATTCCACAAAGACCGCAACGCTAAATACAGAAGAGGACGATATTCTGCAGCAAGCGTTAAAAAACAGCGGCTTACCGAACAAAAACGAAGTCACTCCGAAAGAAACCGCGGAACCGAAGAAGACGGATTCGCCAACGTACGTCACATTACTCGACAGAACCGCCGGTGGTACTTCAAgGAAGTATCTTACCATAAAGCAACGCTGCGTGGGAAACATACGGTGGTACGCGTGTTTATTCTGCCCGAAAGAATTCAAAAAACCATCGGATTTAATACGTCACTTACGCGTGCACACGCAGGAAAAACCTTTCAAGTGTAAATATTGCGTGCGATCCTTCGCATTAAAATCGACGATGATAGGACACGAGCGGACTCATACTGGAATGAAGAAGTACGTTTGCGACTCCTGCAAACAAACTTTCGCGTGTCATAGCAGTTTCACCGCTCATTTGAGATTACACACGAAACTGCACAAGTGCAACATATGCGACAAGTCGTTCAGCGCGAGCACGATCTTGAAGAATCACATGAAGAGTCACACGCGAGAGAAGCCGAAGATATCGCCGGAGGCGGAAAGCCTGGTGCCTCAAGTGGTGCTGCAGGAGCCGCTCGTCATCAGCGGCGCCGGTAATAAAATCAGCGTGGTGCAAGTGCAGTCGAAACAAAAACAGTTGTACGAGAGCGTCGGCGTGGCCAGGCCGCACGAGTGCCGCACTTGTCACGCAGCGTTCAGGAAAATCAGCCACTTGAAGCAACACGTTCGCAGACATACGGGCGAGCGGCCTTACAAGTGCGCGAAGTGCGACAGGAGATTTACATCCAACAGCGTTCTGAAATCTCACCTACATACGCACGAAGACGCGCGACCGTACAGTTGTTCGATATGCAACACGAAATTCTCCACGCAGAGCAGCATGAAGAGGCACCTGGTCACGCATAGCAGTAAAAGGCCGTTTATGTGTCCCTATTGCCACAAGACGTTCAAGACGTGCGTCAATTGTAAGAAGCATATGAAAATACACAAACACGAGCTAGCGCAACGGCAATTGGAGGAACAAAAGACGCACGAGCATACCGGACAACAGCCTCCGAGCCAGGATAAAGACGCTGCACCAGCATTGCCGGAGAGCATCGCCCTCGCCGAAGACATGGAGGTGTCGTTTCAACCGCAAATGGCGCCAGATTTTACGCAGGCTTTCTCCGAtcagtttcaaaatattagcACGGAGAAGGAGAAGTCCTTTCTACTGTCGGACAGCGCAACGCCATCGATTGCGAATCaaaatttatctGTCGACACAACTAATTTGGGAACGTCGCAAACTCTACACGCTGACGAAACCGGTACCATCACGTTGTCTCATTATTCAGGGGATCAAACTCTCACGCCGGAAAGCATACGAGAGATCGAGGAGACTCTAAACCAACAATTGTTCAATATCGGCATGAATCTCGGGCTGGAAACGAACAACCTGACGAGGCAGATGGATGATGCGAATACGGGTTCCCTCGACAATCCCAGGGAGCAACCGGTGCTGAATATAATATACGAGCACAACAAGAATCTGGATTCATCCGGCAACGCCATATTCACGCCGCAATTCGACAATTTCGATATGAGTCAAATTACGTTACAGGCGGACAATGAGATAAACATTGGTCTGAATCCGAGCAACTCCACGAGTATGTCCAGCATCTTGCCCAGATCCGTGACAGGAAGCAACGGCCAGCAGGAGGAACAACAAGCCGCGCCGATTACCACTGCCAGCAGCATAGACGCTTCCCAAATTACGAGGAACACTCATCTGATGGTGATAAATCCCAAGGAGAATTGTTCGGAATTGATGAAGCTTTGCCCGCCCAAGTACTCGAAAGTCATCGCGAAGGCGGACACCACGAATGAATTGGAGATGCGAGGAGTGAGCGGGCCGAAAAAAGCGCCGCAGAAAGGCAACGCTGTATCGTGCGAGAACGACAGAAGTCTTTTGTTCACGGAGAACTTTCAAAGTACAATGCAGGAGGCGCTTATTTCCTCCGACTTGGATAGCTCGGTCAAAATAGCGGAATGCAACACCCTGTTGCAGTGTCACATGTGCGGCAACCAAGGTTTCACAACGGAGGGATTGAAGGAGCATCTAAAATCTCATCGCGGCACCAAGGAGTACGAGTGTACGGAATGTTCCCAGCGATTCTGCACGAACGGCGGTCTCAGCAGGCACATGAAGATGCACACGAATAAACAGCAGTGGAAGTGCACGACCTGTCAGAAGGTGCTGGGCAGCAAGCTGCAATTGAAGTATCACAACAAAGTGCATACCGAGGCTTGGAACGTTTCGTCTATGGAAGCGGACAGTTCTCAGAAGGAACTAATCTCATCGAGTTCCGGTCTGCCGTCGATAACGACGCTGGATGTTCGAGTAGATGCGGACTCGTCGGTGTCCGAGAAGGTCTTAATGGACGCCGTTGCCGAGAAAAAGAGTATGGATTGTGCGGATGAAAAAGTGGAGAAGAAGGAAAAGAGGGAGTACACGAACAAGTGCAAGTACTGTCCGAAAACTTTCCGCAAACCGAGCGACCTCATCAGGCACATTCGCACGCACACGGGCGAACGGCCGTACAAGTGTGAACACTGCAACAAGAGCTTCGCGGTGAAGTGCACTCTGGATTCGCATATGAAGGTTCACACGGGCAAGAAGACGTGCTACTGCCATGTTTGCGGCAGCATGTTCGCTACGAAGGGCAGTTTGAAGGTTCACATGCGATTGCATATAGGCTTCAAACCGTTCAAGTGTCCCGTGTGCGATCTGCGATTCCGCACTTCGGGTCATAAAAAGGTGCACATGGTGAAGCACGCGAGGGAGCACAAGAGCGGCGCGAAGCGCAAGCCGAAGCATCTGAAAGTCGCAGCGGTGGCGGAAGCAGTGGCCAGTCTCGAGAAGGTCGACAATAATCCTTTGAACAGCACGACGCCGATGACGacggcaacgacgacgaccgTGATCAACGACGCAGCCGCGTCGTCGCAGAACTTGGATTATCCCGCGTTGGAGCACACGGTGAATCTCGATAGCGCCGTTCATCTGCCGAATCAGATCGCGTTTAATTACGCCGAcccggcgacgacggcggcgacgacggcgacgattCTCAACAATAATTCCATGCTATCCGTGAACGACAGCAACGAACTGGTGGCGAATCTGCAGTTCCTGCTGGCGAACGGTCTCGTCACCATTCAAACGGACGACACCCTGCTGACGCAGCCAGCGACAGGCAGCTCCGACGCCACCGGCGCCGCGATGCCGACCAACGTGATCGAGCTGGTCAATCCGAATCCTTTTCAGGATGCGTGCAATTTGAGCAACGCCAATCACATGGTGATAACCAGTCAGGTGCCGACGGAATCGCGAGCTGCGGACGCGAGCAGCGGAACGGCGGTTATTCAAATGAACGAATGCATGGCTCCCATTTCCGTGGTGCAGTTGCAGGATCAAAGCACGTCCGAAGCGAAGACGAGTGGTCAATCGATAACGATAGCGGTCGATCAATCAGCGGcagcgacgacgacaacgacgacggcgacgaccgCGAAATCCGTGACACAGTCTTCGAGGAAGGATTGCGATGTATGCGGGAAAACGTTCACGAAGCCGTATCAAATGGAGCGGCACAGGCGCATCCACACGGGCGAACGACCGTACAAGTGCGAGCAGTGCGGTAAATCGTTCGCGCAGAAGTTCACGTTGCAGCTACACCAGAAGCATCACACAGGCGACCGGCCGTATCCCTGTCCGCACTGCAAACACTCGTTCACGCAGAAGTGCAACCTGCAGACGCATCTAAAGCGTGTCCACCAGCTGGTTATGTTCGACTTCAAGAAGCTGAGGAATCAGCAGATGCTCGGCGCGCTTCTACAGGACAATCAAGCGGCTGACGCTAAGCTAGTAAGCCTGGACGATATATTAGTGGTGGATTTTCTCAAGTAA
Protein Sequence: MSTNMLTEQNVVLESTDSSDTMPIGLITTDDGHTLLAMGEYEDGTLKIMAAPIALMPQNNMVSPTLVKTVDGNFILHSPVFQLNVEGLSGTGMQQANLLPMIQHLENGPGIIEQLKLAQNANECAVTEPLSPIKADSNVLLDKEQATIDNTNSESMPVSILRNIYRSPGRPKKTGNTQFLKCDICRQEFTKRMLYRRHMQNHAEEKPHRCPKCSASFNIPTNFTLHMATHNTGDPKCPECGRKYARMASLKSHMLLHEKEENLFCTECEDAFLTKAQLDAHLKLHGEKWANEDARKCKLCNKQFVQPALYRQHIREHYRQQTKIARQTKRGTKHKTVYKCTICLKFFQKPSQLLRHLRVHTGEKPFKCTICSRAFTQKSSLQIHTWQHNGVRPHSCTLCTAKFSQKGNLKAHILRVHNTAEGEPTYACSYCSCVFKKLGSLNGHIKRVHTNVLEESVVKLLETNSVVSPEADMRATVDSVISQLASLESAVNNTTDNSTKTATLNTEEDDILQQALKNSGLPNKNEVTPKETAEPKKTDSPTYVTLLDRTAGGTSRKYLTIKQRCVGNIRWYACLFCPKEFKKPSDLIRHLRVHTQEKPFKCKYCVRSFALKSTMIGHERTHTGMKKYVCDSCKQTFACHSSFTAHLRLHTKLHKCNICDKSFSASTILKNHMKSHTREKPKISPEAESLVPQVVLQEPLVISGAGNKISVVQVQSKQKQLYESVGVARPHECRTCHAAFRKISHLKQHVRRHTGERPYKCAKCDRRFTSNSVLKSHLHTHEDARPYSCSICNTKFSTQSSMKRHLVTHSSKRPFMCPYCHKTFKTCVNCKKHMKIHKHELAQRQLEEQKTHEHTGQQPPSQDKDAAPALPESIALAEDMEVSFQPQMAPDFTQAFSDQFQNISTEKEKSFLLSDSATPSIANQNLSVDTTNLGTSQTLHADETGTITLSHYSGDQTLTPESIREIEETLNQQLFNIGMNLGLETNNLTRQMDDANTGSLDNPREQPVLNIIYEHNKNLDSSGNAIFTPQFDNFDMSQITLQADNEINIGLNPSNSTSMSSILPRSVTGSNGQQEEQQAAPITTASSIDASQITRNTHLMVINPKENCSELMKLCPPKYSKVIAKADTTNELEMRGVSGPKKAPQKGNAVSCENDRSLLFTENFQSTMQEALISSDLDSSVKIAECNTLLQCHMCGNQGFTTEGLKEHLKSHRGTKEYECTECSQRFCTNGGLSRHMKMHTNKQQWKCTTCQKVLGSKLQLKYHNKVHTEAWNVSSMEADSSQKELISSSSGLPSITTLDVRVDADSSVSEKVLMDAVAEKKSMDCADEKVEKKEKREYTNKCKYCPKTFRKPSDLIRHIRTHTGERPYKCEHCNKSFAVKCTLDSHMKVHTGKKTCYCHVCGSMFATKGSLKVHMRLHIGFKPFKCPVCDLRFRTSGHKKVHMVKHAREHKSGAKRKPKHLKVAAVAEAVASLEKVDNNPLNSTTPMTTATTTTVINDAAASSQNLDYPALEHTVNLDSAVHLPNQIAFNYADPATTAATTATILNNNSMLSVNDSNELVANLQFLLANGLVTIQTDDTLLTQPATGSSDATGAAMPTNVIELVNPNPFQDACNLSNANHMVITSQVPTESRAADASSGTAVIQMNECMAPISVVQLQDQSTSEAKTSGQSITIAVDQSAAATTTTTTATTAKSVTQSSRKDCDVCGKTFTKPYQMERHRRIHTGERPYKCEQCGKSFAQKFTLQLHQKHHTGDRPYPCPHCKHSFTQKCNLQTHLKRVHQLVMFDFKKLRNQQMLGALLQDNQAADAKLVSLDDILVVDFLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01523538;
90% Identity: -
80% Identity: -