Lhum002371.1
Basic Information
- Insect
- Linepithema humile
- Gene Symbol
- bab1
- Assembly
- GCA_000217595.1
- Location
- NW:267295-599841[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-17 1.7e-14 52.6 0.0 1 43 377 420 377 422 0.95 2 2 5.1 7e+03 -3.8 2.3 6 15 499 508 497 509 0.88
Sequence Information
- Coding Sequence
- ATGACGCAGCAAAGCGGCGCTGGGTCACCCCAGCAGTTCTGCCTGCGCTGGAACAACTATCAGACTAATCTGACCAATGTCTTCGACCAGCTCCTACAGAGCGAGAGCTTCGTGGACGTGACCCTGGCCTGCGACGGGCACAGCGTCAAGGCGCACAAGATGGTCCTGTCAGCTTGCAGTCCGTACTTCCAGGCTCTGTTCTTCGACAATCCCTGCCAGCACCCGATTGTCATCATGAAGGACATTAAGTGGCCGGAGCTGAAAGCTGCGGTCGAATTCATGTACAAGGGCGAGATTAACGTCTCTCAGGAGCAGATCGGGCCGCTACTCAAGGTCGCAGAGAGCTTGAAAATCCGCGGCCTCGCGGACGTCAATAGCGAACAGGAGCTGACGTCTCGACCGAGCCTGGAGGAAGCCGCGACCGCGGCAATGCAGCGGAAGAAGCGCCGCCGGATGTCCGGCGAGCGCTCGCCGTCCGGCAACAGTCCGGATCGCGTCGGCTCCGGCAGTATCGTCGACGACCAGGACGTGATCGGCAATGTCATCGTGCCGGAGATACACAACATGGTGCCGCCGACCGCCAGTTCGACACCGAGATCTATGGGTTCGCCTAGCACGCCCAGCATCTCCGTCACCCCGCAAATAAATCTGCAGGAGCTTCCGGTCTCCCTGCCCttaccgccaccgccgccgccaccgccgcaaGGACAGCAGAGCTCGCATCCCCTGCCGACCCACCACGTGTCCGGCCACGTGACTTCCGGTCCGCACGCGCCCGTCAACCACCTAGGCGCCCACGGCCAGCAGCTCAGcgtgcagcagcagcagcaacagcagcagcagcagcagcagcaacagcaggcACCGCATCATCAGCAGGGCGCCGGCGGTCAGCCCGGCACCGGCGACGACCTGGAGATCAAGCCCGGCATCGCGGAGATGATACGGGAGGAGGAAAGGGCCAAGTTGTTGGAGTCGTCCCACGCTTGGCTCGGCGCCTCCACCTCCAGTATAGCAGCAGACAGCTACCAGTATCAACTGCAGTCCATGTGGCAGAAGTGCTGGAACACCAACCAGAGCCTGGTGCACAATCTGCGCTTCCGGGAACGCGGACCCCTCAAGTCCTGGCGACCTGAAACAATGGCAGAGGCGATCTTTAGCGTGCTGAAGGAAGGACTTTCTCTCAGTCAAGCGGCAAGAAAATACGACATCCCCTACCCGACGTTCGTCCTGTACGCGAATCGCGTGCACAACATGCTGGGTCCTAGCGCCGACGGCGGGGCCGATTTGCGCCCGAAGGGGAGAGGACGACCGCAGAGGATCCTGCTGGGCGTCTGGCCGGACGAGCACATCCGCGGTGTGATTCGCGCGGTGGTATTCCGCGACGGGCACTCACCCCACATCGTCAAGGAGGAGCCGACCACCATGTACCCCAGCCTGGCGAACTACGCCTGCAACGGTCCGGAAGGTGCGGTCAGCCCGGGTGCGGCGGCCGCAGCCGCGGTCGCAGCGGTCGCTCAAGGTCTACGACACCAAATGTGCAGTATGGTAGCGGCGGCACACTCGCAACAGCACGATATGATGGCGACGAATCTATCGACGAGCCTGTCCACCAACCTATCGTCGAACCTGCAGGCGGCAATGCAGGCGAGCCAGCAtcacaacaacaacaacacgAGCGGCAGTAATGCGAGTCTTGCCGGCAGCGCCGGTGGCAACAACAACGGCAATTCCCCGTTGAATCTCGGCCTGGCGAGCCCAGGCTCGGGCGGCCCGCCCGAGAGCCCGATGGAGAGTCCCCTAGCGAGCCCGCTGGGCCCGCTGATGGATCCGGCGGGCCATATACCCAGCAGCGTGGAGGTCGGCATCGGCGTGAGCGGCATGACGTACAAGCCGGCGCGGAGCTTCGTCAGTCCGCGCCCGGAGACTCTCTTCCAGGAGGACATCGCCGACCTGGTGAAGAGTCCCCACGGTCTCAAGGACAAGGACAAGATCCCGGTGAAGCTCGAGCCGCTCACGGATTCACGCTGCGAATAG
- Protein Sequence
- MTQQSGAGSPQQFCLRWNNYQTNLTNVFDQLLQSESFVDVTLACDGHSVKAHKMVLSACSPYFQALFFDNPCQHPIVIMKDIKWPELKAAVEFMYKGEINVSQEQIGPLLKVAESLKIRGLADVNSEQELTSRPSLEEAATAAMQRKKRRRMSGERSPSGNSPDRVGSGSIVDDQDVIGNVIVPEIHNMVPPTASSTPRSMGSPSTPSISVTPQINLQELPVSLPLPPPPPPPPQGQQSSHPLPTHHVSGHVTSGPHAPVNHLGAHGQQLSVQQQQQQQQQQQQQQQAPHHQQGAGGQPGTGDDLEIKPGIAEMIREEERAKLLESSHAWLGASTSSIAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGHSPHIVKEEPTTMYPSLANYACNGPEGAVSPGAAAAAAVAAVAQGLRHQMCSMVAAAHSQQHDMMATNLSTSLSTNLSSNLQAAMQASQHHNNNNTSGSNASLAGSAGGNNNGNSPLNLGLASPGSGGPPESPMESPLASPLGPLMDPAGHIPSSVEVGIGVSGMTYKPARSFVSPRPETLFQEDIADLVKSPHGLKDKDKIPVKLEPLTDSRCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141751;
- 90% Identity
- iTF_00898877;
- 80% Identity
- iTF_00898877;