Lhum003601.1
Basic Information
- Insect
- Linepithema humile
- Gene Symbol
- usf1
- Assembly
- GCA_000217595.1
- Location
- NW:7708641-7711270[+]
Transcription Factor Domain
- TF Family
- TSC22
- Domain
- TSC22 domain
- PFAM
- PF01166
- TF Group
- Basic Domians group
- Description
- These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Drosophila protein bunched [1] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.069 3.8e+02 0.7 0.0 11 38 140 168 139 170 0.79 2 2 6.6e-08 0.00036 19.9 0.2 17 47 220 250 217 257 0.94
Sequence Information
- Coding Sequence
- ATGGACATTTTGGAGCAGCAACTCGAACAGCAGGATGTCAGCGTCGTGAAGGAAGACGGCGATGGCTCGGGGATTGTTATAGAGGAAACGGAAATCGTGGATTGCGACGgGGAGCCTGTTGCAGAGGATGAAATGCATTATCAAGAAACCTTAGCATATCGGTTTGTTCAAGTGAATGGTACGCCAGATATACAATCAGCCAACGAGATAGAACTGCCTGTGTCGCAACCAGGGAATAATACAGTGCAAGTTCTGACGTCACCTTTGAACGGACAGTTTTATGTTATTGGCAACGCGAACGATGTCTTCACCACAGCCCAGGCATCGAGATCCTTGATGCCAAGGGCAACCGCTTTACAGATAGAAACCCCAAGAAATTGTACCGCTGGCTTGAAGAAGAGGGACGACAGGCGGAGAGCAACGCACAATGAAGTTGAACGTCGGCGTagagacaaaataaataactggATTGCAAAGTTAGGTAAAATCATACCCGAGTGTAATCCTAGTACTACTACGACTGGCAGTGGCAGCAGTGGAGAAGGAAAGACCAATTATGAAACTCAGAGTAAAGGAGGCATTTTGGCAAAGGCCTGCGAATATATAGGAGAACTGCGCACAGCTAATCAAAATCTAAGTCAATGTTTACGGGACAACGACAAACTGCGGCAAGAAATCACGGCGCTAAAACAATTAGTTGCCCAATTAAAACGTGAAAATCTCCAACTCAGATCACAAATATCACCCTCGTCATCGGCCACTAGTACTGACGTTGTACATTTGAGTTCGGGATCCTAA
- Protein Sequence
- MDILEQQLEQQDVSVVKEDGDGSGIVIEETEIVDCDGEPVAEDEMHYQETLAYRFVQVNGTPDIQSANEIELPVSQPGNNTVQVLTSPLNGQFYVIGNANDVFTTAQASRSLMPRATALQIETPRNCTAGLKKRDDRRRATHNEVERRRRDKINNWIAKLGKIIPECNPSTTTTGSGSSGEGKTNYETQSKGGILAKACEYIGELRTANQNLSQCLRDNDKLRQEITALKQLVAQLKRENLQLRSQISPSSSATSTDVVHLSSGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01119990;
- 90% Identity
- iTF_00898478;
- 80% Identity
- iTF_00898478;