Laur026707.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Limnephilus auricula
Gene Symbol
-
Assembly
GCA_951813805.1
Location
OX638417.1:13197158-13200760[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.015 0.86 10.8 5.7 2 23 382 404 381 404 0.95
2 21 0.063 3.7 8.8 6.0 1 23 410 432 410 432 0.97
3 21 0.00041 0.024 15.7 1.1 1 23 438 460 438 460 0.97
4 21 0.013 0.76 11.0 0.3 1 23 466 488 466 488 0.97
5 21 0.0016 0.095 13.8 0.6 2 23 496 517 495 517 0.97
6 21 2.3e-05 0.0013 19.7 0.6 1 23 523 545 523 545 0.97
7 21 0.039 2.3 9.5 1.3 3 23 553 573 551 573 0.97
8 21 1.6e-05 0.00096 20.1 1.2 1 23 604 626 604 626 0.98
9 21 0.001 0.062 14.4 1.5 1 23 634 656 634 656 0.97
10 21 0.0012 0.07 14.2 0.7 2 23 664 686 663 686 0.96
11 21 0.00032 0.019 16.0 2.6 2 23 757 779 756 779 0.96
12 21 0.13 7.5 7.9 5.6 1 23 785 807 785 807 0.97
13 21 0.00041 0.024 15.7 1.1 1 23 813 835 813 835 0.97
14 21 0.0041 0.24 12.5 0.2 1 20 841 860 841 863 0.91
15 21 0.001 0.059 14.5 0.8 1 23 870 892 870 892 0.97
16 21 4.1e-05 0.0024 18.8 0.6 1 23 898 920 898 920 0.97
17 21 0.32 19 6.6 1.1 1 23 926 948 926 948 0.97
18 21 6.1e-05 0.0036 18.3 6.4 1 23 984 1006 984 1006 0.98
19 21 0.05 2.9 9.1 3.1 1 23 1017 1039 1017 1039 0.98
20 21 0.0004 0.024 15.7 1.9 1 23 1045 1067 1045 1067 0.97
21 21 0.0002 0.012 16.7 0.2 1 23 1073 1095 1073 1095 0.97

Sequence Information

Coding Sequence
ATGGACCACCCTATCAATATGGAGCACATCTCCTACCTGCAGGGTCACCTGACCCACGATGACCCTCTCAACCTCAACACCAACTTCCAGAGGAACGTTTACCTGCAGCGCGGTCAGGAAACATACCTCCCCCACAAGCCCCAGGAGACCTACATGACGCAGAAGGTACAGACCACCTACACCGCCCAAAAGGGACAAGAAACCTACATCGCCCAAAAAGGACACGTCGGGTACAGCATCGCCACAAAAGGACAGGCCTATATCGCGCAGAAATCGCAGGAATCCTACATCAATCAGAAGAATCAGGAAGCGGCTTACATCAACCAGAAAAGCCAGGAAGCTTACATCCAGCAGAAGGGACAAGACACGTACATCAATGTCCCAAAACTACAAGAGACATATCTCATCCCTAAAGGACAGGAGACGTACATTATTCCCAAGACTCAAGAGTATATCATTCCCAAAACACAAGAGTATATCGTGCCGAAAACCAACGAGTCCTACATCACGAAAGATCAGGATGGGTCTCGCGTGTTTTCAGCTTCCTACATCATCCCCAAGGAGCAGGAAGAATACATCCTCTCAAAGCAGCAAGAGACGTATCAGCTGATCCCAAAAACGCAAGAGTCTTATCTCCCGGCCAAAGAGCAGGAGATTTACATGGTTCCCAAGACGCAGTCGTATATTATTCCGAAAACGCAAGAGACCTACATCCCGCCGAAGGGTCAAGATGCCTACATCATTCCTAAGACGCAGTCCTACATCATCCCTAAAGAGCAAGAGGCATACATTTTACCCGATAAGCAAGAGTATATGAACAAAGTTCAggaagcttacatacaaaaagATCAAGCTACGGATATGATGCAAAAGGATATCGATGGGCTGTGTAACTACGAGCGGAGACAGGAAGACTATTATCTGATTCAAGTCACAGTGGCAGATCAGGAACAGGTTGATAAAGTTATGGAGAAACAACAGCAGCATCACATGCTCCAGCAACATCACCACCAGGTCCCCGAGGAGCAGATGAACATACAGCTCGAAGTACAACACGGAAAGAAGATCATGCAAAAAGAAGACATCAACCTCGCGCAGTTGACCGTTTGCGATAACGACAAAGTTACGCAAACCAAACCGATATCATGCGACGAATGCTCCTACAGTTGTCGCTATCCTAGTTCTCTGAAGAAACACAAGAAGAACTGCCACACAAAGGGTAGCATCTTCTCATGCAAAGTTTGCAACTATACGTGCGGTAAAAAGCGCGATCTCAAACACCATGAGCTGTCCCATCGCAGGTGGCGGCGGTACGCCTGCGATCAATGCGACTATCGCTTCCAATCTCAGAGCAAACTCGAGATACATAAACTCAAGCACACCAGAGCTAAACCTTTCACGTGCAGCGTTTGCACGCTTCCCTTCCAAAAGCTGGACGATCTGAAGATACACAATGCCACGCACGCGCAGGGCAAAGAAATGATAACCTGCGAAGAGTGCGGCTTCATCTGTTCGCAGCCGTACGATCTTGACAATCACAAACTCACACACGAACAAGAAAAGAAGTTCGCCTGCAACATTTGCGGTCTGCGCTTCCGCTATCAGGTCACGTTGAACGGCCATATGAAAAAGCACGAGGAAAGAAAGATTTACGGGTGCAACCAGTGTAGCTACACGACCAGCAAAGTCTTCTATTTGAAAAACCACATGAAAGGGCACATGTACGGTAAAAAACCAGGCAACCTCGTCCGACGGAAGAAGGTCTCCGCTACCAAGCACGCAACTAAGATCAAGTCTGTGGACCGGCCTTACGAATGCGATCAATGCGGCTTCGCTAGCAAGCGCAAGTTCAATTTGCAAACACACATGAAGATTCACGAACCTCCCACCGGTGAAACGTTCTTCTGCAATGAATGCAATTACACATCTCCTAAAGAAAGAAACCTGAAGAAGCATCAATTGATTCACAAAGAACAGAACAAACCGATAGTCTGTTCGCTGTGTGGATATTCTTGCAAGACCCCGGCTGTGTTGAGGAAACATAAGCTCACAATCCACGACATCGAAGAACAAGAAATTGAGGTTCCGGATAGAGATTGCTATGATAGTGATTACAACGATCGCAGCAGCGGTGTCAAGCGCAAAGTCTCAATCGGCATTCAAACCGATCCCGTCCCTGAAAGCGACGATGACGATTCCAGCGTTAAATGCGACGAAGTCGACGAGAAGCCGATCAAGAGAATCCGCGCTCCCGGTCCCAGAATCGTGACCTGCGACGAGTGCTCCTACTCCTGCAGATATCCCAGCACGCTGAAGCGCCACAAGAGAAGCGTGCACACCCAGCAAAACATCTACAACTGTAAAGTGTGCAGTTACACGTGCGGCAAGAAGCGAGATCTGAAACATCATGAACTTATGCACCGACGGCTCAGAAGATACGCCTGCGACCAATGTGACTATCGCTTCCAGTCTCAAAGCAAATTGGAAATACACAAACTGAAACACACTCAAGCTAAACCTTTTTCATGCAGCGTCTGCGGTTTAAGTTTCCCCAAACTTGCAGAGCTAAAGATACACAACTTTGACCATGCGCAAGGAAAACAGATCTTTTCTTGCGATGAGTGCGGGTATATCTGCACGCAGATTTACGATCTAGAGAATCACAAGCTCGTACATGCGCATGAAAAGCGATTCGCTTGTCAAGAGTGCGGCCTGCGATTCAGCTACCAAGTGACGCTCAACGGACACATGAAGAAACACGCGATGAAGAAGTTGTTTGCCTGCAATCTGTGCAGCTTCGTTGGCACCAAGATGTTCTATCTTAAAAAGCACGTCCAGTCGCATTACGAAGAAAAGAAAACGTCTTGCGACGAGTGTGGATTTACGCCTAAAAATCCAACGGCGACTGCGCTTAAATTACACATGCAAACGCATTCTCCGGTAAAACCTTTCTCGTGTACGATTTGCCAGTTTACTTGCAGATCGAAATCTAACCTAAGAACGCACATGAAGAAACACATGAGACCGCAAACAGAGAAATCAAAACTATTCTCCTGCTCACAATGCAAGTATCAATCAACGAAATCCAAAAATTTCAAACTCCACTTGTTGATTCACAGAGAGGACGAACCTTTCGCTTGCGACGAATGTGGTTACACTTGCAAACTGCCGAGCTATCTCAAATCCCACAAACTAACGCACGCGCTCGTTAAACCATTCCCTTGCGACGAATGTGCTAAAAGCTATCGCACGGCATTCGATCTTAAAGTCCACAAAATGATACACAGACCAGATCCTTTTGCCTGCGACGAATGCGATTTCAACACAAACTGTTTCACCAATCtgtacaaacataaaaagtcaCACATTGCCGCCGCCAAAGCGCCTAAAATGATCCAGACATTGTTAGATACAATTCATATGGACGGTAGTATACAGGTGGAAGAGATCCACAATAATGTCATGCAGGACGGTATGCAAGACGGTATGCAAGACCAAGATCATATGCAAGGAAATATCCACGTTCAAACGTTGCAGGTTCACACAATGCACGATGGAACATTACAATTGGAAGCGCTCGGTCCTGGTATAATGCACGGTTGA
Protein Sequence
MDHPINMEHISYLQGHLTHDDPLNLNTNFQRNVYLQRGQETYLPHKPQETYMTQKVQTTYTAQKGQETYIAQKGHVGYSIATKGQAYIAQKSQESYINQKNQEAAYINQKSQEAYIQQKGQDTYINVPKLQETYLIPKGQETYIIPKTQEYIIPKTQEYIVPKTNESYITKDQDGSRVFSASYIIPKEQEEYILSKQQETYQLIPKTQESYLPAKEQEIYMVPKTQSYIIPKTQETYIPPKGQDAYIIPKTQSYIIPKEQEAYILPDKQEYMNKVQEAYIQKDQATDMMQKDIDGLCNYERRQEDYYLIQVTVADQEQVDKVMEKQQQHHMLQQHHHQVPEEQMNIQLEVQHGKKIMQKEDINLAQLTVCDNDKVTQTKPISCDECSYSCRYPSSLKKHKKNCHTKGSIFSCKVCNYTCGKKRDLKHHELSHRRWRRYACDQCDYRFQSQSKLEIHKLKHTRAKPFTCSVCTLPFQKLDDLKIHNATHAQGKEMITCEECGFICSQPYDLDNHKLTHEQEKKFACNICGLRFRYQVTLNGHMKKHEERKIYGCNQCSYTTSKVFYLKNHMKGHMYGKKPGNLVRRKKVSATKHATKIKSVDRPYECDQCGFASKRKFNLQTHMKIHEPPTGETFFCNECNYTSPKERNLKKHQLIHKEQNKPIVCSLCGYSCKTPAVLRKHKLTIHDIEEQEIEVPDRDCYDSDYNDRSSGVKRKVSIGIQTDPVPESDDDDSSVKCDEVDEKPIKRIRAPGPRIVTCDECSYSCRYPSTLKRHKRSVHTQQNIYNCKVCSYTCGKKRDLKHHELMHRRLRRYACDQCDYRFQSQSKLEIHKLKHTQAKPFSCSVCGLSFPKLAELKIHNFDHAQGKQIFSCDECGYICTQIYDLENHKLVHAHEKRFACQECGLRFSYQVTLNGHMKKHAMKKLFACNLCSFVGTKMFYLKKHVQSHYEEKKTSCDECGFTPKNPTATALKLHMQTHSPVKPFSCTICQFTCRSKSNLRTHMKKHMRPQTEKSKLFSCSQCKYQSTKSKNFKLHLLIHREDEPFACDECGYTCKLPSYLKSHKLTHALVKPFPCDECAKSYRTAFDLKVHKMIHRPDPFACDECDFNTNCFTNLYKHKKSHIAAAKAPKMIQTLLDTIHMDGSIQVEEIHNNVMQDGMQDGMQDQDHMQGNIHVQTLQVHTMHDGTLQLEALGPGIMHG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00675293;
90% Identity
-
80% Identity
-