Laur007600.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- lrrfip2
- Assembly
- GCA_951813805.1
- Location
- OX638394.1:13073333-13092072[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-100 7.5e-96 321.6 25.5 1 300 123 414 123 414 0.96 2 2 0.025 7.1e+02 -0.1 3.5 9 231 448 481 415 489 0.50
Sequence Information
- Coding Sequence
- ATGTCTCGCCAAAACGGTGTGAATTCATCCAAAAGTTCTGTCAATGGCAGTGATAGTAGCAGTGCGGCAGGAAGTGAAAATGACCAGTTCACCGATGGAGATTTCGATGACTCGGATGGTGAAGTCACAATATGCGCTAAAGCGGATGACTCCAAGGGTATCCCCTGCAACGAAGCGGTCAACCCGCACATGTTTCCCGGCTTGACCAACGGCGGTGTCCAACTGAGAGACAAGACCAAGATGAATTCTCTGGCCCCGAAGCTACCACCGGGCCACGAAAATAACGGCATCTTCAACGAGAACAACGCCCTCATCAGCAACGAGGACCTGAGCATTATAGGCATCCTCGGCAAGGATCACGACAGAGCGGAAGCGCGTTTGGCGGCCAGGAGAGCAGCGAGAGCAGAGGCGCGTGAGATCCGTATGAGAGAGTTGGAGCGCCAGCAGAAGGAACAAGAAGAAAATGCCGACCGGGTCTATGACATGTATTCAGATACGACGACTCGCGTGGCCCGAGTGGGGTCCAGAGTGGTCAGCAGCGCACCGTCTTCAGGGAACTATCACTCCTCGCGCAGAAGCTCCGAAGACTCGGTGGAGGAGATGGGCAGCATCAGAGACATTAGACACGAGCTGAAGGAAGTGGAAGAGAAGTTCAGAAAAGCCATGATTCTCAATGCCCAGCTGGACAATGACAAGGCATCATTCTCTTATCAGCTCGAACTGCTCAAAGACAAACTGGAGGATCTACAAGAACAGTACACACAACTTCAGCGTGAACACAAAGACAAGTGTCGAGCCTTTGACTCTCTGACGCGCGAGTGCCGCGCCACCCGCGAGGAGCTGGAGCGCTGCACGGCGGCGGTGCTGCTGCGCGACCGCTGCATCCGCGAGGCCGGCCTGGAGCTGGTGGCCGTGGAGGGGGAAGGGGGCGAGGGGGCGGGTGCCGCCCTTGTGTCCTCGGCGGGCAGGGAGGCCCTGGAGCAGGCCGGCCAGGGGACACTCGatGTGCGATTGCAAACCCTCTGCTCCGAGAGACAAACGCTGGAGAAGGAGGTCAAACAACTGAAGGCCCAACTGGAGGAGGAGAGGTCCAGGAAGAAGTCCACACTTCACAACTCTTCCAATGGACCAGTCAACGGCTCGGACAGCGACTCTGATTCTTTTGATCATCAAAGAGAAAATTCAAAACTGGTTGCCGATTACAAATTCCGGGCTTGCAAGGCCGAACAAGATGTGCTGACTCTTCAGGCCACAGTGGCGCGCCTTGACAGCCAGGTTCTCCGCTATCGCAGTGCCGCAGAGCAGGCCGAGCGCATGGAGGACGAACTCAAGTCTGATAGGCGGAAACTGCAGAGAGAGGCCCGGGAAGCGCTGAGCCGAGTGGAGGAGCTGGAGACTGAGAATAGTCACTTGAATAAACGTTTAGACAAACTAAAGACTGCCAAGTCTGCCTTGCTCAAGGAACTCTGA
- Protein Sequence
- MSRQNGVNSSKSSVNGSDSSSAAGSENDQFTDGDFDDSDGEVTICAKADDSKGIPCNEAVNPHMFPGLTNGGVQLRDKTKMNSLAPKLPPGHENNGIFNENNALISNEDLSIIGILGKDHDRAEARLAARRAARAEAREIRMRELERQQKEQEENADRVYDMYSDTTTRVARVGSRVVSSAPSSGNYHSSRRSSEDSVEEMGSIRDIRHELKEVEEKFRKAMILNAQLDNDKASFSYQLELLKDKLEDLQEQYTQLQREHKDKCRAFDSLTRECRATREELERCTAAVLLRDRCIREAGLELVAVEGEGGEGAGAALVSSAGREALEQAGQGTLDVRLQTLCSERQTLEKEVKQLKAQLEEERSRKKSTLHNSSNGPVNGSDSDSDSFDHQRENSKLVADYKFRACKAEQDVLTLQATVARLDSQVLRYRSAAEQAERMEDELKSDRRKLQREAREALSRVEELETENSHLNKRLDKLKTAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -