Laur003630.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- -
- Assembly
- GCA_951813805.1
- Location
- OX638390.1:32197254-32199098[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-10 5.5e-08 33.0 0.0 3 33 31 61 29 66 0.95
Sequence Information
- Coding Sequence
- ATGCCCATCTGCATCAGTATCACCATTTATATTTTGGCCTACACGAAGGTCAAAAAGTCGGAGAAGAAACAGCGGAAGACGTGGAAcacagaaaaattgataaaagccATGGAAGCTGTAAAATCGAAGACCATGGGATATCAGAAAGCCGCCATTCTTTACGAGGTCCCTCGAAGCACTTTATTCGGACTGTGCAAGCCTAGCGCTGAAGAAGATGCCACGGAAGCTGCGCTTGGACGAAATTCAGTCTTGAGCCAGGTTTTAGGCGACAGTTGCTGGATTACCTATCCAAACAGAACTATTTACGGACTGGTTCCAGCACTTCATCAAATATACGAAACTAAAACCTTGACGGACTTTACAGCCACACACTCAGCATTCATGTTATAG
- Protein Sequence
- MPICISITIYILAYTKVKKSEKKQRKTWNTEKLIKAMEAVKSKTMGYQKAAILYEVPRSTLFGLCKPSAEEDATEAALGRNSVLSQVLGDSCWITYPNRTIYGLVPALHQIYETKTLTDFTATHSAFML
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00897702; iTF_00897703; iTF_00897704; iTF_00897705; iTF_00897707; iTF_00897711; iTF_00897714; iTF_00897718; iTF_00897722;
- 90% Identity
- iTF_00897711;
- 80% Identity
- -