Laur019408.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- -
- Assembly
- GCA_951813805.1
- Location
- OX638407.1:10205739-10206074[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3e-11 1.5e-08 34.8 0.0 3 35 13 45 11 53 0.90 2 2 2.8 1.4e+03 -0.3 0.1 2 9 53 60 52 61 0.89
Sequence Information
- Coding Sequence
- ATGTCGGAGGAGAAACAGCGGAAGACGTGGAAcacagaaaaattgataaaagccATGGAGGCTGTAAAATCGAAGACCATGGGATATCAGAAAGCCGCCATTCTTTACGAGGTCCCTCGAAGCACTTTATTCAGACTGTGTAAGCCTAGGTCTGAAGAAGATGCCATGGAAGCTGCGCTTGGACGAAACTCAGTCTTGGGCCCAGTTTTAGGCGACAGTTGCTGGTTTACCTATCCAAACAGAACTATTTATGGACTGGTTCCAGCACTTCATCAAATATACGAAACTAAAACCTTGACGGACTTTACAGCCACACACTCAGTATTGATGTTATAG
- Protein Sequence
- MSEEKQRKTWNTEKLIKAMEAVKSKTMGYQKAAILYEVPRSTLFRLCKPRSEEDAMEAALGRNSVLGPVLGDSCWFTYPNRTIYGLVPALHQIYETKTLTDFTATHSVLML
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00897709;
- 90% Identity
- iTF_00897711;
- 80% Identity
- -