Lcam011440.1
Basic Information
- Insect
- Limenitis camilla
- Gene Symbol
- -
- Assembly
- GCA_905147385.1
- Location
- LR990229.1:659966-669433[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.3 3e+02 2.9 1.9 3 22 446 465 444 468 0.90 2 13 2 1.8e+02 3.6 2.4 2 19 490 507 489 513 0.91 3 13 0.0017 0.15 13.3 5.6 1 23 527 550 527 550 0.97 4 13 0.00085 0.075 14.2 1.3 1 23 555 579 555 579 0.92 5 13 2.2 2e+02 3.4 0.1 2 23 600 624 599 624 0.88 6 13 0.00031 0.028 15.6 0.2 2 21 630 649 629 650 0.96 7 13 0.00021 0.018 16.1 0.8 1 23 710 731 710 731 0.98 8 13 1.9e-05 0.0017 19.4 0.5 1 23 737 760 737 760 0.95 9 13 0.00071 0.063 14.5 0.6 2 19 782 799 781 802 0.92 10 13 0.0067 0.59 11.4 0.3 2 23 809 832 809 832 0.97 11 13 0.16 14 7.1 3.9 1 20 839 858 839 861 0.95 12 13 0.0032 0.29 12.4 0.7 1 20 867 886 867 888 0.93 13 13 0.096 8.6 7.7 1.3 1 23 898 921 898 921 0.97
Sequence Information
- Coding Sequence
- ATGCTGTCACCTCACGATGACGACGATGACAGCCATTTATGCATCAAGTGCAACGCTACCATCATCGGTCTCGACAACTATGTTAAGCATAGAAAACAACAAGTCTGTAGCAAGGGGAAGAATGAAACTAAAACAGATCTTCCGTCAATCGATCCACTAGAACCATCGTACAGTCTCGGAGCAGATGTATTTTTTCAATCCCTAGAATTACAAAGCAGCGTTAAAAAGTCATCTTTGTCGCGATTAACACCACCTGCAACAATTTCTAAAACAAATTTAGCAAGCATCGAAAAAAAGAGCATTTTGACTGTCGCGTCCACTTCCCACCTTCCTCGTATGAGTCCTATAGAAACTAACTTAAGAGGAGAAGATTGGATCGGAGGACATAGTTTAAGAATAGGAAGCAATGAAGACAATCAAACAAAATTGATAAATGCTGTTGCTAGTATTAGTGGCTCAGTAAAAAAAGATATTCCAAGTACTTCCTATAACATTGAATCTTTTAATGATTATAAAGGTGAAGAAGATTCTGAGGAATCCGAAGACTCAGATGATGAAGACGAAGATGATTTACCGCATGGGGGAAAATGGAAACCACCACCAAACTACACGGGTGGCAAATGGCGACCAGCATCTCCAGATCACGAGGAGTGGGAAGAACAGGAACCACTCGATCGTGATTACGATTATGATGCACCACCACCCGGACATACAAAAGGTAAATGGGTTCCGGGGGCTAATGAGAAGACTCAAATAATGCAAACGACAATTCAATCAAAGGGATGTGTACAATATTGGTGTGGACCTTGTAACCGACGGTTAGGATCAAGAGCAATCTATGACAAACATCTCATGTCCAGCTTACACATGCGAAAAGTTCTTCCAGAACATGAGTTAGAATTTTCAGGACATTTGGACCCAATCAGAAACATCGCAGATAAGAGAGCATCTCGCCCTACTTTAATCGTTAATGAAGCAAATACGCAAAATCAAAGAAAAAAGCTGAAAGTAGAACCAAAACTGAACATTAAAATTAAGAAAAAGAAAAGAAAGAGGAAGACTTATTTCGTTGTTTGTTCAGGGTGTAAATCACGTGTTCGTACACACCTTATGGGAAAACATCTCATATCCCACTATCACTTTCGAAAAGCTGTGGATATAAAGAGTGATGTTTATCAACAACTTATTCTGAGTAACATAGAAGCAATAGTACACCAAGCACCATTTCAGTGCAGCCCATGTAAATTTTATACTAATTGGCTTTCAAATTTTATGCAGCACTGGTTTTCTGAAGATCATGAACGTACCATTTCATTTATGGATGGTCGATATTGGTGTTCATTTTGTAAATTTGAATGTGATACATCTCAAGATATGTTAAATCATATGTCTAGCTCTGAGCATAGTGAAGTAGTAGCAGTGATCAATAGATCCATGCCTATCATTATAAGGAAGAAGACTGTGCTACGTTGTGAAACATGTCATATAGAATTTCGTTATAATATGGAAATAAAGCAGCACTGCCTAAAAACGGGCCATGAGTGTGCCTTCACCGCGACCGACCACTATCAAGAATTACATAGATGTCAACATTGCAAACAAAAATTTAAATCATCAATCACTTTAGCAGCACATTTGAAATCCAGGCATAAACAGAAGGTGTTCTTCTGTCTTGTATGCTCAAAGACATTTAGTTCATCTGAAGAAGCGAAACGACACCGCCAAACTTCAGAGCATAGAGTGAGAAGAAAAGAGAAATTACGGGAACGCGGAGGACCTATTAAAAATATGAGTAAGAAATGTCCATATTGCACTGACATGGTGGTTTTAACTAATATCTTAGAGCTAAAGGATCACATACGAAGAGTGCATCCTAACATCAGGAAAAAGTGTCCAAAATGTGGAAAGGCGTTCATCTTTTCTCAAGAAGTATCCCGGCATATCCGTGACAACGCTTGTGAATTCCAAAATTCCAAAATCCATTCAGATGCAATCAACACCCCCATACTGTGGAACTGCAGCCAATGTCTATTTACAACTGACTCACAAGCTGAATGCTTCTTTCACGAGATATTGCACACTGAACCAATTACAGAAACTAGAGAAGGGGCTAAGCCTATCCAAAAGTATTCTTGCCCTTTATGCCCGAAGAACTTTAAAAAAGCTTCCTTACGCCTTCACTTAAGGCAACACACTTTTGAAAGGCCATTTATTTGTTCGACGTGTGGCGCGAATTTTTCAAGACAGTCAAGCTTGACCAATCATTCCAAGGTCGAGCATGGAAGCTTCGATAAGTTATCGTTACTAGGTAAAGCTATGACGAAGATAGCTGAGGAGACGTTGAGGTGTTTGAAATGTAAGAAGACGTTCGATGACAGTGAGGCATTGACCCGCCACTCTACTACCTGTGAATCAGATGGACGGAAATGTCCTTATGGGCAATGTTCTTATATCGCCTCTAGCCTTGCTCAACTCAACAGGCACAGACGTACACATGGCGAGGGACTTAAGAACTACGAATGCACATCCTGCGACTTCAAGACAGACCAGGCGAGTCACATGAAGAGACACCTGGCATGTCATAAAGGAGACAAACCTTACGCCTGTCCACATTGCCCATTTACTTGTGGAAGTTTGGAGAATCTCCGCAAGCATGCCATTCGAAGTGGTCGCCATCCAGGATCATTTCTTTACACGTGTGCTACCTGCTCTTTCAAGACTAATCTCGCCTCCGAACTTCGCTCGCACTATACAACTCAGCATCAAGATAAATATAACTCCAAGACTGCTATGGAAGCTGTTAAACGACATTTAATGAAAAATGATTAA
- Protein Sequence
- MLSPHDDDDDSHLCIKCNATIIGLDNYVKHRKQQVCSKGKNETKTDLPSIDPLEPSYSLGADVFFQSLELQSSVKKSSLSRLTPPATISKTNLASIEKKSILTVASTSHLPRMSPIETNLRGEDWIGGHSLRIGSNEDNQTKLINAVASISGSVKKDIPSTSYNIESFNDYKGEEDSEESEDSDDEDEDDLPHGGKWKPPPNYTGGKWRPASPDHEEWEEQEPLDRDYDYDAPPPGHTKGKWVPGANEKTQIMQTTIQSKGCVQYWCGPCNRRLGSRAIYDKHLMSSLHMRKVLPEHELEFSGHLDPIRNIADKRASRPTLIVNEANTQNQRKKLKVEPKLNIKIKKKKRKRKTYFVVCSGCKSRVRTHLMGKHLISHYHFRKAVDIKSDVYQQLILSNIEAIVHQAPFQCSPCKFYTNWLSNFMQHWFSEDHERTISFMDGRYWCSFCKFECDTSQDMLNHMSSSEHSEVVAVINRSMPIIIRKKTVLRCETCHIEFRYNMEIKQHCLKTGHECAFTATDHYQELHRCQHCKQKFKSSITLAAHLKSRHKQKVFFCLVCSKTFSSSEEAKRHRQTSEHRVRRKEKLRERGGPIKNMSKKCPYCTDMVVLTNILELKDHIRRVHPNIRKKCPKCGKAFIFSQEVSRHIRDNACEFQNSKIHSDAINTPILWNCSQCLFTTDSQAECFFHEILHTEPITETREGAKPIQKYSCPLCPKNFKKASLRLHLRQHTFERPFICSTCGANFSRQSSLTNHSKVEHGSFDKLSLLGKAMTKIAEETLRCLKCKKTFDDSEALTRHSTTCESDGRKCPYGQCSYIASSLAQLNRHRRTHGEGLKNYECTSCDFKTDQASHMKRHLACHKGDKPYACPHCPFTCGSLENLRKHAIRSGRHPGSFLYTCATCSFKTNLASELRSHYTTQHQDKYNSKTAMEAVKRHLMKND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00214005;
- 90% Identity
- -
- 80% Identity
- -