Lcam015817.1
Basic Information
- Insect
- Limenitis camilla
- Gene Symbol
- -
- Assembly
- GCA_905147385.1
- Location
- LR990253.1:6133660-6141869[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.5e-08 2.2e-05 24.7 0.0 1 36 147 182 147 188 0.92 2 3 5.9e-08 2.9e-05 24.4 0.0 1 39 562 600 562 603 0.96 3 3 0.0013 0.65 10.5 0.0 1 42 618 660 618 663 0.86
Sequence Information
- Coding Sequence
- ATGGAAGTAGAGCAAAGTAAAAAGCGCGATTGTCTACATAAATGCAAGTGTTGTTTAGAAGAGACGGGATTAAAAGATTTGTGGTCTCCCAATGATGATGGAGAATGTGAGAAATACGGCGATATGTTGACGGAATGTTTTGCACTTTCATGGGAAGAACCTTCAGACATCAATTCAGAATATATTTGTAGAAACTGTATCAGTAGATTAAAAGCTGCAGTTAAGTTTAAAAAGGAAATCTTATACTCCGAGCAGATGTTACTGTTAAAAATTGAACAGGAAACCTTTGAAAATACTAAGCAGGATACTGAATTGGAAGATGAGGTGACGACAGAATATTTAGAATTAGAGGAAGATAACTTTACTCAGGAAACAACAACTATTAAAATAGAACCAATAGAAAATCCTGAAGTAGTGAAAAAAAAGTACAAAAACTACACGGACGAGGATTTACAGAAATGTGTAGATGCAGTTCTTAAAAACAAAATGTCACAAAATAAAGCGTCAATCACGTTTAATGTGTCTCGGAGCGCTATCAGTCGAGCACTGGCAAAATTAGAGCGAGCGAAAAAACCCAAAAAGAAAGTTGCACCAGAATTACAAAAATCACAAGAAAATTTGGATTATATATTAAAATATTCAAATGCGACGCCATTTAAAGGATTTTTTGGAAATGGATACACTTGCTTTTTGTGCCCAAAAAAATTTGAGGAGCCGTTTAAATTGAAAAGTCATACATTAAAACATTTGAGGAATAAAAAATTAAGTGTGGTGATACCTATTGGTCAATGTGTTAAATTAGATTTGAGTGATTTAGAGTGTAATGTTTGTGTGTTGAAGATTGATTCACTCGAGAGTTTATTGGAACATTTGAAAGTTAAACACGGGGAATCAATTCATACTTTTGATGGTGAGAAAAGTGAGAACTATTTGGTGCCGTTCAAGTTTGAAAGTGATGTGTTGAGTTGTGTTGTGTGTTGCGAGGACTTTTTGACATTCAAATTGTTGTATGATCATATGAATTGTAAGCATTATAGTAATTATGAGTGTGTGGAGTGTGGAAGGGGTTTTATTAGTCAGATTTCTTGGAGAACGCATGCGTTGAGACACAAAACTGGTGTTTTTGAGTGTACGTTTTGTGTGAAAGTTTTTACTAGCCGCGACCGTTGTAATGCTCACGAGCGCAGCGTCCATTTATTGAAACATAAACGTTATAAATGTGGTTATTGTGACGAGAAGTTTGTGGATATTGTTAAAAAACATGAGCATGAGGTGGAAGTTCACAATGCGGTAAAAAAGTTGTTTGAATGTGGCACATGTCATAGAAAGTACAAAAGTGTGAAAAATTTGAGGTTTCATATTGAAGATTATCACTTATTGAATCGCCCGCACAAGTGTAGTGTATGTGAGTTTAGTGCAAAGAAGTCTACGGAGTTGAAGAATCATATATTGAAGCATACGAGGGTGAAGGGTTACAAGTGTGATGTGTGTTCGAAGTCGTATGTGAGGAAGACGACCCTCCGCGAACACTTGCGGATACACGCGAATGATCGTCGGTTCAAGTGTGAGGAGTGCGGGCAGCGCTTCGTGCAGAAGTGTAGCTGGCGGGCGCATATGCGCGTGAAGCATGCGGCCATCAAAAAACCAATCAAATCCCAAGGAGAGAAGAAGCCGAAAACATACACAGAAGAAGATTTACAGAAGTGTCTAGAAGATGTTAAAAATGGAAGGTTTACGCAGGGCAAAGCGGCTTTGTTTTATGATATACCAAGAACTACCATCACTCGAGCTTTAAAGAGATTCGAATTGAGATTAGCAAAACCAGAGACATTAAAAAAGATAAAACAATACACAGATGAGGATTTAAAGAATTGTCTTGAAGCGATCGAAAACAACACGTTTTCTCAAACAAAAGCGTCAGAGTCGTACAAAATACCAATAAAAACTATCAGGAGGGAATTAGCGAGGAGATCCACCAAAGCCTCTACTGAAACCAGTGAAAAAACAAAAGTTTTCAATAAAAAGAAACGAAAGGAAAGACCTATATCAGACTCATACTTGTTCCCCGAGCTGAGAAACTTTGACAGTGACGTTTGCGTTCTCTTTGACTGTTCCAACGCAACCCCTATCAGGTGTAGAGGTGGTGTGGGTTACAAATGCTGTTTCTGTCCACAACAATTCCCAGATCCCGCAGATCTCAAAAAACATTCGGCAAACCAACACGAAAACAAAACGATAAGTACCCTCCTAAGAGGAAGACATGGATCTGCCTTCTTACTAAAATTGGATATCTCGTATCTCCATTGCAAAATTTGCGACAAAAAAATGGAGACGCTGGAAAGTTTGGTCAATCACTTAATTGGCGATCATAATCGGAATATACATAAAGATATCAAAAACTTTATTTTGCCGTTTAAGTTTGAAGGAGATGAGATTCGTTGTGTTATTTGCAATAGTTTGTTTAACAAATTCAAAGTGTTGCAAGAGCACATGAGCACGCATTTTCGGAATTACATCTGCGACTATTGTAATGCTGGATTTGTCACGCGCTCGATTTTGTTGAAGCACATGAAATGCCATTTAATAGGTCTATTTAAATGTGGAGTATGTGACAAAACTTATGATACGGTAAGGAAGAAGAGAGCTCATGAGATCCAGGTCCATATCCAGGGTAGGATGTTGTACAAATGTGGGTACTGTAGTGAGAAGTTTAATAGATATCAGAAGCGGGAGCAGCATCTTGTTAAAGTGCATGGGGTGCAGTCTATTACGTTTAAGTGTCAGGCTTGTGATAAGGTGCTGGTGTCTCAGCAGGCGCTGCGAGACCACACGAGGAGGGATCACCTGATGGAGCGTCAACACACTTGTCCGGAGTGCGGGTTGAACTTCTTCAGGCCGAGTGACGTGAGACGGCACATGGTGAGGCATAATGGTGTGAGGAAGTTTCAATGTGACGTTTGTTTGAAGTCGTATTCTAGACTGAATACTCTGCGCGAACACTTGAGGATACACGCGGACGATAGACGGTTTAAGTGTGAGCATTGTGGTGTTGGGTTTGTGCAGAAGTGTAGTTGGCGCGCACACATGCGCACCAAGCATGGTGAACAAGTGTAG
- Protein Sequence
- MEVEQSKKRDCLHKCKCCLEETGLKDLWSPNDDGECEKYGDMLTECFALSWEEPSDINSEYICRNCISRLKAAVKFKKEILYSEQMLLLKIEQETFENTKQDTELEDEVTTEYLELEEDNFTQETTTIKIEPIENPEVVKKKYKNYTDEDLQKCVDAVLKNKMSQNKASITFNVSRSAISRALAKLERAKKPKKKVAPELQKSQENLDYILKYSNATPFKGFFGNGYTCFLCPKKFEEPFKLKSHTLKHLRNKKLSVVIPIGQCVKLDLSDLECNVCVLKIDSLESLLEHLKVKHGESIHTFDGEKSENYLVPFKFESDVLSCVVCCEDFLTFKLLYDHMNCKHYSNYECVECGRGFISQISWRTHALRHKTGVFECTFCVKVFTSRDRCNAHERSVHLLKHKRYKCGYCDEKFVDIVKKHEHEVEVHNAVKKLFECGTCHRKYKSVKNLRFHIEDYHLLNRPHKCSVCEFSAKKSTELKNHILKHTRVKGYKCDVCSKSYVRKTTLREHLRIHANDRRFKCEECGQRFVQKCSWRAHMRVKHAAIKKPIKSQGEKKPKTYTEEDLQKCLEDVKNGRFTQGKAALFYDIPRTTITRALKRFELRLAKPETLKKIKQYTDEDLKNCLEAIENNTFSQTKASESYKIPIKTIRRELARRSTKASTETSEKTKVFNKKKRKERPISDSYLFPELRNFDSDVCVLFDCSNATPIRCRGGVGYKCCFCPQQFPDPADLKKHSANQHENKTISTLLRGRHGSAFLLKLDISYLHCKICDKKMETLESLVNHLIGDHNRNIHKDIKNFILPFKFEGDEIRCVICNSLFNKFKVLQEHMSTHFRNYICDYCNAGFVTRSILLKHMKCHLIGLFKCGVCDKTYDTVRKKRAHEIQVHIQGRMLYKCGYCSEKFNRYQKREQHLVKVHGVQSITFKCQACDKVLVSQQALRDHTRRDHLMERQHTCPECGLNFFRPSDVRRHMVRHNGVRKFQCDVCLKSYSRLNTLREHLRIHADDRRFKCEHCGVGFVQKCSWRAHMRTKHGEQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00897125;
- 90% Identity
- iTF_00897125;
- 80% Identity
- iTF_00897125;