Ladu020190.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ligdia adustata
Gene Symbol
-
Assembly
GCA_947049285.1
Location
CAMRIN010000713.1:167267-188370[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 2.9e-05 0.002 18.8 2.2 1 23 420 442 420 442 0.97
2 20 0.0025 0.18 12.8 0.9 1 20 448 467 448 470 0.94
3 20 2.2e-05 0.0015 19.2 5.6 1 23 489 511 489 511 0.98
4 20 0.00011 0.0075 17.1 4.1 1 23 517 539 517 539 0.99
5 20 3.8e-05 0.0027 18.4 5.3 1 23 545 567 545 567 0.97
6 20 0.00046 0.032 15.1 8.4 1 21 573 593 573 595 0.95
7 20 1.9e-06 0.00014 22.5 2.8 1 23 601 623 601 623 0.97
8 20 0.00011 0.0075 17.1 6.7 1 23 629 651 629 651 0.97
9 20 0.0001 0.0074 17.1 6.5 1 23 657 679 657 679 0.97
10 20 5.1e-07 3.6e-05 24.4 1.9 1 23 685 707 685 707 0.98
11 20 5.2e-05 0.0037 18.0 7.9 1 23 713 735 713 735 0.98
12 20 2.6e-05 0.0019 19.0 6.6 1 23 741 763 741 763 0.98
13 20 2.4e-05 0.0017 19.1 5.4 1 23 769 791 769 791 0.98
14 20 1e-05 0.00073 20.3 2.0 1 21 797 817 797 818 0.94
15 20 1.1e-05 0.0008 20.1 5.2 1 23 871 893 871 893 0.98
16 20 3.2e-06 0.00022 21.9 6.0 1 23 899 921 899 921 0.98
17 20 6.1e-05 0.0044 17.8 7.9 1 23 927 949 927 949 0.97
18 20 2.4e-06 0.00017 22.2 5.6 1 23 955 977 955 977 0.98
19 20 0.00046 0.033 15.0 0.3 1 23 984 1006 984 1006 0.97
20 20 0.026 1.9 9.5 5.5 1 23 1015 1037 1015 1037 0.99

Sequence Information

Coding Sequence
ATGAATCCTGAGCACCACAATATTAATCCGGGAGGTGGTCAACCCCCTGGGGGTACCGAGCCTCAAGGGCAGAGAGTTCAGGCTACACAGCAACAGCAGCAAGGAAGCCTGCCTGCGACGTCATCTGCCACTGATTTAAGAGTGAACACAGCAGCTGTGAATGTGGCTTTGTCAAGTGTAGCAAAGTATTGGGTGTTTACGAATTTATTCCCTGGTCCAATCCCACAAGTATCTGTGTATGGATTACCTACTGGAACTAGAATTGAAAATGGAAAACCAGTTCAGGACCTAGGACAACATGCAAGCATTCTCAATGGAGATCCTAATATCATACTGGGACATCATGGTGGGCAGCCGCAGGTCACAGTGTCTGCAGGCGCCCAACAAATACCCGTGTCACAGATTATTGCCACACAATCAGGACAGACACATGAAGCGCTGGTTGCTCACAGTCAACACAGCCAGGAGTTGGTGCAACAGGCCACAGCAGGATCCCAGGTTTCTGTCGCCGGCCAGGCGTCCCATCACCAGGTACCCAATAACCGGGTGGAATTTGTACAACACCATAACATTGATATGGGTCACCACACGCAGCAACATATTCTCCAGCAACAGCTGATGACAGCGCGCCCTGAACATGCTAATCAGCAGATTCAGCTGACCGTCAGTGAGGATGGTATCGTGACCGTCGTCGAGCCCGGAAGCAGTAAGATGGTGGACAAGGAAGAATTGCATGAGACCATCAAGCTACCATCAGACCATCCCTTGACCATTCATCAGCTGCAACAGATTGTGGGACAACAGCTTGGCACACAAGTGTTAGAAAACGTGGTCCGCATCGAACAGGCCACGGGCGAACCGGCCAATATTCTCGTCACTCACAACGCCGACGGCACCACGTCGATAGAAGCGAGCGCCTCCGACCCCCTCGCCATCGTCAAGGACGAGAAGACCCAAGGAAAGATGGAGACAGCACAGTTCGCCATACCTACAGAGATCAAGGATATTAAGGGCATCGATCTGAAGACTGTAGGAGCAATGGGCATGGAAGGTGCTGTCGTTAAGATATCCACCGGAGCGGACCACGATATGACCGCCATGTACAAAGTCAACGTTGAAGATCTCTCGCAGTTGTTGGCCTATCACGAAGTCTTCGGAAAACTGAACGCGGATGGCCAGACGCAAAATAAAGGTGACATAGAGATCGAAGTGCCGGGACCTAGCCAAATGTCAGAAGCGGAATCCTCGCCCGGACATCATTCCTGTGATATATGCGGCAAGGTGTTCCAGTTTAGATATCAACTCATTGTTCACAGACGGTACCACGGTGAAAGTAAGCCCTACAGTTGCCAAGTGTGCGGTTCGTCGTTCGCCAATCCAGTAGAATTATCACGACACGGGAAATGCCATCTTGCCGGCGATCCAGTGGAAAGGCACGCTAAGAGGATAGCTCAGGACAAGCCGTACGCGTGCACTACTTGCCATAAAACCTTCTCGCGTAAGGAACATCTGGACAACCATGTACGGAGTCACACTGGGGAAACACCTTATAGATGCGATTTTTGCGCCAAGACTTTCACCCGCAAGGAACATATGGTGAACCACGTACGGAAACACACGGGCGAGACGCCGCACCGGTGCGACATCTGCAAGAAGAGTTTTACCAGGAAGGAACACTTCATGAACCACGTCATGTGGCATACAGGTGAGACACCGCACCAGTGTCAAACATGTGGCAAGAAATATACGAGAAAGGAGCATTTGTCGAACCATATGCGGTGTCACAATAATGACACGCCGTTCAGATGCGATCTATGCGGGAAATCGTTTACGAGAAAGGAGCATTTCTCTAATCACATTTTGTGGCATACTGGCGAAACCCCCCACCGTTGCGACTTCTGTTCCAAAACGTTCACTCGCAAGGAGCACCTGTTGAACCACGTGCGGCAACACACGGGAGAATCTCCTCATCGGTGCAACTTCTGCTCAAAGTCGTTCACTAGGCGCGAGCATTTAGTGAACCATGTGCGGCAACACACGGGAGAAACTCCCTTCCAGTGCGGATACTGTCCGAAGGCGTTCACTAGGAAGGACCATCTCGTGAACCACGTCCGTCAACACACGGGCGAATCTCCCCACAAGTGTTCGTTCTGCACCAAATCGTTCACTCGCAAGGAGCACCTCACTAACCACGTGCGGCAACACACGGGAGAATCTCCGCATCGCTGCACATACTGCGCCAAGTCGTTCACCAGGAAGGAACACCTCACCAATCATGTCAGACAGCACACGGGTGAAACGCCACACAAGTGCACGTTCTGCCCGCGCGCGTTCTCGCGGAAGGAGCACCTCAACAACCACGTGCGGCAACACACCGGCGTCACGCCGCACGCCTGCTCCTACTGCAACAAGAGCTTCACCAGGAAGGAGCATCTCGTCAACCATGTCAGGCTTCAGTGCCGTGTCTCCCCTGGTACTGATACTGGGTCCGTGTCTCCTTTGCGCGGGGGAGACGAGGACCTTCCATTTTTAGACCCGCTTTTGGGTGTCTCCCTTGATGTCTCCTTTGGGGAGACAAGAGGATCCTTGCAACACACGGGCGAGACGCCGTTCAAGTGCACGTTCTGTTCGAAGTCATTCTCTCGCAAGGAGCACCTCACGAACCACGTGAACCTTCACACGGGCGAGACGCCGCACAAGTGCCCCTTCTGCACTAAGACATTCTCGAGGAAAGAACATCTCACTAATCACGTCAGAATCCACACGGGCGAATCGCCGCACCGTTGTGACTTCTGCCAGAAGACGTTCACTCGCAAGGAGCACCTCACAAACCACCTGAAGCAGCACACGGGCGACGCCGCGCACACCTGCAAGATATGCTCAAAGCCCTTCACTAGGAAAGAACATCTTCTCACACATATGAGGTCTCACAGTTGCGGCGAACGGCCGTTCAGTTGCGGCGAGTGCGGCAAATCGTTCCCGCTCAAAGGCAACTTGATGTTCCACGAACGGTCGCATCAGAAGGGCGGCGGCGCGAGACCCTTCCGTTGTGAAGTTTGCTCTAAGGACTTTATGTGCAAAGGTCACTTGATCACACACCGGCGCACGCACACGGAGCAGCCAGCGGCGACAGAAGAGGCTCGACCCGCAGCCGAGGACTGCTCCTCCAAGTGCGTCAAGGTGGAAACCGACCCGCTCGCGTTGGAAAACAAACCTAAGGGTGAAGACGTGCGAGCAACCGAGAGCATCATAGTGCCACATCCGCAGGCGTCGCCAAGCAACGCTGCGGTGATGCAAATATCTAACCAACAAACCCGCACAGTGACCGTATCATCATCTCCGGGTATAACATCAGCCACATTCACTCACACCGTCGCCTCCCAGCACCACACGGGCACGGCCATCGCTCACCACCCGGTCAGCGTCACCTACTAG
Protein Sequence
MNPEHHNINPGGGQPPGGTEPQGQRVQATQQQQQGSLPATSSATDLRVNTAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQDLGQHASILNGDPNIILGHHGGQPQVTVSAGAQQIPVSQIIATQSGQTHEALVAHSQHSQELVQQATAGSQVSVAGQASHHQVPNNRVEFVQHHNIDMGHHTQQHILQQQLMTARPEHANQQIQLTVSEDGIVTVVEPGSSKMVDKEELHETIKLPSDHPLTIHQLQQIVGQQLGTQVLENVVRIEQATGEPANILVTHNADGTTSIEASASDPLAIVKDEKTQGKMETAQFAIPTEIKDIKGIDLKTVGAMGMEGAVVKISTGADHDMTAMYKVNVEDLSQLLAYHEVFGKLNADGQTQNKGDIEIEVPGPSQMSEAESSPGHHSCDICGKVFQFRYQLIVHRRYHGESKPYSCQVCGSSFANPVELSRHGKCHLAGDPVERHAKRIAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCDFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHQCQTCGKKYTRKEHLSNHMRCHNNDTPFRCDLCGKSFTRKEHFSNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHVRQHTGETPHKCTFCPRAFSRKEHLNNHVRQHTGVTPHACSYCNKSFTRKEHLVNHVRLQCRVSPGTDTGSVSPLRGGDEDLPFLDPLLGVSLDVSFGETRGSLQHTGETPFKCTFCSKSFSRKEHLTNHVNLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLTNHLKQHTGDAAHTCKICSKPFTRKEHLLTHMRSHSCGERPFSCGECGKSFPLKGNLMFHERSHQKGGGARPFRCEVCSKDFMCKGHLITHRRTHTEQPAATEEARPAAEDCSSKCVKVETDPLALENKPKGEDVRATESIIVPHPQASPSNAAVMQISNQQTRTVTVSSSPGITSATFTHTVASQHHTGTAIAHHPVSVTY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00634709;
90% Identity
-
80% Identity
-