Ladu012338.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ligdia adustata
Gene Symbol
-
Assembly
GCA_947049285.1
Location
CAMRIN010000339.1:298591-301002[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.9e-09 6.3e-07 29.4 0.0 1 42 16 57 16 60 0.90

Sequence Information

Coding Sequence
atggttcgaaattatgtccgaaaaacagatagagcatctaaatacacgcgtgatgacttgctggaagctattacaaaagtgaaaagtggtgaattgacggcgtacagagcctctattgcatataatattcctagaccaacaatagtagctcgagtatatggtagatatggcgaaaaatctgattctttaggaagatgtacagtcattccaattgaaatagaaaaaaaattggcagaaaacttacatcaaatggaaatatacggattcggtttgtcaagaacagaaattatggagcttgttggccactacgtaacaaaaaacgaaataaaaaatccgtttaaaaacggcatcccaggagaagactggtttttgtcattcaaaaaacgccacaatctggctgtcaaaaaaccacaagccgtggaaaattctcggaaaaaagcctgcaatccgtggattatatacccctattatgatttgctgaaagacacaatggatttattggaattacacaataaaccttcacaaatatggaacctggatgagacaagtttttgcaaagaccccagtaaaacgaaggtagtgggtttgaaaggatacgcttctacaagaactattgcatcacctggcaaaagcaacactacggttttactgggaattagtgccgctggagacaaaactccgccacttattgtttacaaaggaaaagacatttgggaccagtggacgtctgagtatgactatcctgggactaggtatgcggcgaccaagaatggttggatggaaacagatgtctttgagaatttttttgagaaagtgtttttgccgacagtgggagataaacgacccatattgctcatatatgacggccacgctacacatgtaggattaaatatgatagaaaaagcacgtgaagcggatatcactatcttaaaaatcccagcacacaccagcgacaatctgcagccactagatttggcagttaataagtcttttaaggacaagtgggatcaggcccttgtaaagtggcaaagattgcatgtgggtgaagtgttgcctaaaaaagacttctcaaaacttattggcgaaatttgggctcaagtagatccTAAAGTTTGTGTTGCTGGGTTTCGCAAGGCTGGTATTTTTCCTTTTAATAATAATGCAGTGCCAGAAGAAAAATTTCACCCAGATCAACTTGCGGAATATAAAAATCAGCTTGGCCAGTCCAATAAACCTCAAACTCAAGACCAAAGTACTCAGCAAACTCCAGGCCCCTCATGGGCCAAAGATCTATACAAGAATGAAACTAAGATTTCGCCCGTGAGCAACATACGTATTAGTGTTCCATCGCCATTTCCTTCATTGATTTTCCTCTGTTTGAACAAAGTAAATGATCATCGGAAAGAAATCTTATCTGTAAAAGACAAACACCTTTTTGACGCTAAATCTGCTGAAACTACACCGTCTGTTGATAACAATGCAAAAAAAATTACTATAATAGAAAATCGTGTAGTAAAGTGTAAGTATACTTTTGAAGAATTGTTGCTTCAGAAAATAAGATCAGGGTCACCACATAACAAACAAAAACGTACAAAAGTTGCTGGCGGTGCAGAAGTCATAACAAGTGAAGAAGTTTTTAAAAAGCAAAAACATATTGAAGAAGAAAAGACGAAAAAAAATAAAGAAAAAGAGGAGAGAATGAAAAAAAGATTGGAGAAAAAATTTGCAAGAGACATAAATGTAAAATCTTGTAAAGAGAAAAATAAAGCAATAAAAAATACCATTATTAAAGGAGACGGAAAAAAGACTGCAAAAGTAAATATCTTCGAGGACAACAAAAACAGTGAACCTACTAACAAATGTATAAGAAACGTAAAGAGACAAACATCGGCAAACAGTAAAAAGAGAAAACTAGTCTATTCTTCAACCAGCGAAAGTGATGCTGACTTAGAACTAATGGATGAAAGTGATCTCGAAAATTTAGAAGAAATGTTAAATGATGAGGAAATGGCTATAGAAAACTACGAAGATATGTTAGGTGATGAGGAAAATGATCACAATGTCGATTTACAAACAGAAACAAATAATGCAGATAATTACGATGATCCGCCCACAAGTACTGTTGTTGCAGGCCAATGGATTTTAGTAAAATTTACTACAAAATCAAGCCTAAAACATTATGTAGGAATAGTTTCAAGTGTAAACCAAGAGGGAATACCAACGGTAAAGTACGTCAGAAAAAGTGCTTGCAGAGGCAGCGAGGATAATACTGCATTTATATACCCTGATGTACCTGACGTTTGTGAGCTAAGACATCTTGATGACATTGAGTGCAAGTTACCCAATCCTATAATTGGGCGAAGAGGAAAAATCTTTTTTAAGATTTCCTTTAAAGGATTTAATGTTACTTAA
Protein Sequence
MVRNYVRKTDRASKYTRDDLLEAITKVKSGELTAYRASIAYNIPRPTIVARVYGRYGEKSDSLGRCTVIPIEIEKKLAENLHQMEIYGFGLSRTEIMELVGHYVTKNEIKNPFKNGIPGEDWFLSFKKRHNLAVKKPQAVENSRKKACNPWIIYPYYDLLKDTMDLLELHNKPSQIWNLDETSFCKDPSKTKVVGLKGYASTRTIASPGKSNTTVLLGISAAGDKTPPLIVYKGKDIWDQWTSEYDYPGTRYAATKNGWMETDVFENFFEKVFLPTVGDKRPILLIYDGHATHVGLNMIEKAREADITILKIPAHTSDNLQPLDLAVNKSFKDKWDQALVKWQRLHVGEVLPKKDFSKLIGEIWAQVDPKVCVAGFRKAGIFPFNNNAVPEEKFHPDQLAEYKNQLGQSNKPQTQDQSTQQTPGPSWAKDLYKNETKISPVSNIRISVPSPFPSLIFLCLNKVNDHRKEILSVKDKHLFDAKSAETTPSVDNNAKKITIIENRVVKCKYTFEELLLQKIRSGSPHNKQKRTKVAGGAEVITSEEVFKKQKHIEEEKTKKNKEKEERMKKRLEKKFARDINVKSCKEKNKAIKNTIIKGDGKKTAKVNIFEDNKNSEPTNKCIRNVKRQTSANSKKRKLVYSSTSESDADLELMDESDLENLEEMLNDEEMAIENYEDMLGDEENDHNVDLQTETNNADNYDDPPTSTVVAGQWILVKFTTKSSLKHYVGIVSSVNQEGIPTVKYVRKSACRGSEDNTAFIYPDVPDVCELRHLDDIECKLPNPIIGRRGKIFFKISFKGFNVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01153858; iTF_00895858; iTF_00895859; iTF_01443769;
90% Identity
iTF_01443769;
80% Identity
-