Ladu018070.1
Basic Information
- Insect
- Ligdia adustata
- Gene Symbol
- -
- Assembly
- GCA_947049285.1
- Location
- CAMRIN010000571.1:157226-159638[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-09 5.3e-07 29.7 0.0 1 42 16 57 16 60 0.90
Sequence Information
- Coding Sequence
- atggttcgaaattatgtccgaaaaacagatagagcatctaaatacacgcgtgatgacttgctggaagctattacaaaagtgaaaagtggtgaattgacggcgtacagagcctctattgcatataatattcctagaccaacaatagtagctcgagtatatggtagatatggcgaaaaatctgattctttaggaagatgtacagtcattccaattgaaatagaaaaaaaattggcagaaaacttacatcaaatggaaatatacggattcggtttgtcaagaacagaaattatggagcttgttggccactacgtaacaaaaaacgaaataaaaaatccgtttaaaaacggcatcccaggagaagactggtttttgtcattcaaaaaacgccacaatctggctgtcaaaaaaccacaagccgtggaaaattctcggaaaaaagcctgcaatccgtggattatatacccctattatgatttgctgaaagacacaatggatttattggaattacacaataaaccttcacaaatatggaacctggatgagacaagtttttgcaaagaccccagtaaaacgaaggtagtgggtttgaaaggatacgcttctacaagaactattgcatcacctggcaaaagcaacactacggttttactgggaattagtgccgctggagacaaaactccgccacttattgtttacaaaggaaaagacatttgggaccagtggacgtctgagtatgactatcctgggactaggtatgcggcgaccaagaatggttggatggaaacagatgtctttgagaatttttttgagaaagtgtttttgccgacagtgggagataaacgacccatattgctcatatatgacggctacgctacacatgtaggattaaatatgatagaaaaagcacgtgaagcggatatcactatcttaaaaatcccagcacacaccagcgacaatctgcagccactagatttggcagttaataagtcttttaaggacaagtgggatcaggcccttgtaaagtggcaaagattgcatgtgggtgaagtgttgcctaaaaaagacttctcaaaacttattggcgaaatttgggctcaagtagatccTAAAGTTTGTGTTGCTGGGTTTCGCAAGGCTGGTATTTTTCCTTTTAATAATAATGCAGTGCCAGAAGAAAAATTTCACCCAGATCAACTTGCGGAATATAAAAATCAGCTTGGCCAGTCCAATAAACCTCAAACTCAAGACCAAAGTACTCAGCAAACTCCAGGCCCTTCATGGGCCAAAGATCTATACAAGAATGAAACTAAGATTTCGCCCAAGAAAAGACGAAAAAAAAATAAAGAAAAAGAGGAGAGAATGAAAAAAAGATTGGAGAAAAAATTTGCAAGAGACATAAATGTAAAATCTTGTAAAGAGAAAAATAAAGCAATAAAAAATACCATTATTAAAGGAGACGGAAAAAAGACTGCAAAAGTAAAAATCTTCGAGGACAACAAAAACAGTGAACCTACTAACAAATGTATAAGAAACGTAAAGAGACAAACATCGGCAAACAGTAAAAAGAGAAAACTAGTCTATTCTTCAACCAGCGAAAGTGATGCTGACTTAGAACTAATGGATGAAAGTGATCTCGAAAATTTAGAAGAAATGTTAAATGATGAGGAAATGGCTATAGAAAACTACGAAGAAATGTTAGGTGATGAGGAAAATGATCGCAATGTCGATTTACAAACAGAAACAAATAATGCAGATAATTACGATGATCCGCCCACAAGTACTGTTGTTGCAGGCCAATGGATTTTAGTAAAATTTACTACAAAATCAAGCCTAAAACATTATGTAGGAATAGTTTCAAGTGTAAACCAAGAGGGAATACCAACGGTAAAGTACGTCAGAAAAAGTGCTTGCAGAGGCAGCGAGGATAATACTGCATTTATATACCCTGATGTACCTGACGTTTGTGAGCTAAGACATCTTGATGACATTGAGTGCAAGTTACCCAATCCTATAATTGGGCGAAGAGGAAAAATCTTTTTTAAGATTTCCTTTAAAGGTTATAATGTTACTTAA
- Protein Sequence
- MVRNYVRKTDRASKYTRDDLLEAITKVKSGELTAYRASIAYNIPRPTIVARVYGRYGEKSDSLGRCTVIPIEIEKKLAENLHQMEIYGFGLSRTEIMELVGHYVTKNEIKNPFKNGIPGEDWFLSFKKRHNLAVKKPQAVENSRKKACNPWIIYPYYDLLKDTMDLLELHNKPSQIWNLDETSFCKDPSKTKVVGLKGYASTRTIASPGKSNTTVLLGISAAGDKTPPLIVYKGKDIWDQWTSEYDYPGTRYAATKNGWMETDVFENFFEKVFLPTVGDKRPILLIYDGYATHVGLNMIEKAREADITILKIPAHTSDNLQPLDLAVNKSFKDKWDQALVKWQRLHVGEVLPKKDFSKLIGEIWAQVDPKVCVAGFRKAGIFPFNNNAVPEEKFHPDQLAEYKNQLGQSNKPQTQDQSTQQTPGPSWAKDLYKNETKISPKKRRKKNKEKEERMKKRLEKKFARDINVKSCKEKNKAIKNTIIKGDGKKTAKVKIFEDNKNSEPTNKCIRNVKRQTSANSKKRKLVYSSTSESDADLELMDESDLENLEEMLNDEEMAIENYEEMLGDEENDRNVDLQTETNNADNYDDPPTSTVVAGQWILVKFTTKSSLKHYVGIVSSVNQEGIPTVKYVRKSACRGSEDNTAFIYPDVPDVCELRHLDDIECKLPNPIIGRRGKIFFKISFKGYNVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00895861;
- 90% Identity
- iTF_00895859;
- 80% Identity
- -