Lnig017978.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- -
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010001582.1:75088-83415[-]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 6.5e-07 0.0023 19.2 5.0 2 38 179 215 178 222 0.82 2 16 6.5e-07 0.0023 19.2 5.0 2 38 228 264 227 271 0.82 3 16 6.5e-07 0.0023 19.2 5.0 2 38 277 313 276 320 0.82 4 16 6.5e-07 0.0023 19.2 5.0 2 38 326 362 325 369 0.82 5 16 6.5e-07 0.0023 19.2 5.0 2 38 375 411 374 418 0.82 6 16 3.6e-07 0.0012 20.1 5.3 2 38 424 460 423 467 0.82 7 16 5.7e-07 0.002 19.4 4.9 2 38 473 509 472 516 0.82 8 16 6.5e-07 0.0023 19.2 5.0 2 38 522 558 521 565 0.82 9 16 3.6e-07 0.0012 20.1 5.3 2 38 571 607 570 614 0.82 10 16 5.7e-07 0.002 19.4 4.9 2 38 620 656 619 663 0.82 11 16 3.2e-07 0.0011 20.2 5.3 2 38 669 705 668 712 0.82 12 16 6.5e-07 0.0023 19.2 5.0 2 38 718 754 717 761 0.82 13 16 6.5e-07 0.0023 19.2 5.0 2 38 767 803 766 810 0.82 14 16 6.5e-07 0.0023 19.2 5.0 2 38 816 852 815 859 0.82 15 16 6.5e-07 0.0023 19.2 5.0 2 38 865 901 864 908 0.82 16 16 4.5e-19 1.6e-15 58.2 8.6 2 67 914 979 913 982 0.95
Sequence Information
- Coding Sequence
- ATGGATTCTTACAGGGATGCCAATGCGCCACCACCGTACGATGGTCCAGGTGAACCTTATTATCCACCAGAAAAGTTTGGATCACCTCTAAATCCTGAAGGTTTACCTCATCAAAGTCAAGGCCCTCCAGGTTACACATCTCACGGCTCAGGATACGCTCAGCAAGGATATGCCCAACAAGAATATCCGCCTCCAGGATATGCTCCACCTACACAGGCATCCTACGGAGCATGCACTCCACAGGGTGTCTCCATGGAAACCAGCCGACCATCTGCTCCTCTCGCATCTGCCGACATCACAGACTCCCCGGAGCAAGTGAAGAAGTCTGAAGCGCAACTCCTGATGTCGCCTGGATGTCAAGACGATGCGCCTCCCAGTTACATCCCGCAGGACTCGGGATATCCTCCTGCTCCTGCAGCGCAAGGATATCCTCTGCCACCAGTTCTACTCACCACCAACCCTCAAGGAGTCCACACGACTGTCTGTGATCACTACTTAGCCCCAGCAGGTCCTGTTGCTGCAGATGTGTACGAGTATCCCACACAGACCATGTGTCCGATATGCCACGAGATGATACTGACCACTGTAACACGCAGCATCACTAAGAGAACTCATCTCGCATCGCTGTGTCATGTGTCATGTTGTCATCCAGCAGGTCCTGTTGCTGCAGATGTGTACGAGTATCCCACACAGACCATGTGTCCGATATGCCACGAGATGATACTGACCACTGTAACACGCAGCATCACTAAGAGAACTCATCTCGCATCGCTGTGTCATGTGTCATGTTGTCATCCAGCAGGTCCTGTTGCTGCAGATGTGTACGAGTATCCCACACAGACCATGTGTCCGATATGCCACGAGATGATACTGACCACTGTCACACGCAGCATCACTAAGAGAACTCATCTCGCATCGCTGTGTCATGTGTCATGTTGTCATCCAGCAGGTCCTGTTGCTGCAGATGTGTACGAGTATCCCACACAGACCATGTGTCCGATATGCCACGAGATGATACTGACCACTGTCACACGCAGCATCACTAAGAGAACTCATCTCGCATCGCTGTGTCATGTGTCATGTTGTCATCCAGCAGGTCCTGTTGCTGCAGATGTGTACGAGTATCCCACACAGACCATGTGTCCGATATGCCACGAGATGATACTGACCACTGTCACACGCAGCATCACTAAGAGAACTCATCTCGCATCGCTGTGTCATGTGTCATGTTGTCATCCAGCAGGTCCTGTTGCTGCAGATGTGTACGAGTATCCCACACAGACTACGTGTCCGATATGCCACGAGATGATACTGACCACTGTCACACGCAGCATCACTAAGAGAACTCATCTCGCATCGCTGTGTCATGTGTCATGTTGTCATCCAGCAGGTCCTGTTGCTGCAGATGTGTACGAGTATCCCACACAGACCATGTGTCCGATATGCCACGAGATGATACTGACCACTGTCACACGCAGCATCACGAACAGAACTCATCTCGCATCGCTGTGTCATGTGTCATGTTGTCATCCAGCAGGTCCTGTTGCTGCAGATGTGTACGAGTATCCCACACAGACCATGTGTCCGATATGCCACGAGATGATACTGACCACTGTCACACGCAGCATCACTAAGAGAACTCATCTCGCATCGCTGTGTCATGTGTCATGTTGTCATCCAGCAGGTCCTGTTGCTGCAGATGTGTACGAGTATCCCACACAGACCACGTGTCCGATATGCCACGAGATGATACTGACCACTGTCACACGCAGCATCACTAAGAGAACTCATCTCGCATCGCTGTGTCATGTGTCATGTTGTCATCCAGCAGGTCCTGTTGCTGCAGATGTGTACGAGTATCCCACACAGACCATGTGTCCGATATGCCACGAGATGATACTGACCACTGTCACACGCAGCATCACGAACAGAACTCATCTCGCATCGCTGTGTCATGTGTCATGTTGTCATCCAGCAGGTCCTGTTGCTGCAGATGTGTACGAGTATCCCACACAGACCACGTGTCCGATATGCCACGAGATGATACTGACCACTGTCACACGCAGCATCACCAACAGAACTCATCTCGCATCGCTGTGTCATGTGTCATGTTGTCATCCAGCAGGTCCTGTTGCTGCAGATGTGTACGAGTATCCCACACAGACCATGTGTCCGATATGCCACGAGATGATACTGACCACTGTCACACGCAGCATCACTAAGAGAACTCATCTCGCATCGCTGTGTCATGTGTCATGTTGTCATCCAGCAGGTCCTGTTGCTGCAGATGTGTACGAGTATCCCACACAGACCATGTGTCCGATATGCCACGAGATGATACTGACCACTGTCACACGCAGCATCACTAAGAGAACTCATCTCGCATCGCTGTGTCATGTGTCATGTTGTCATCCAGCAGGTCCTGTTGCTGCAGATGTGTACGAGTATCCCACACAGACCATGTGTCCGATATGCCACGAGATGATACTGACCACTGTCACACGCAGCATCACTAAGAGAACTCATCTCGCATCGCTGTGTCATGTGTCATGTTGTCATCCAGCAGGTCCTGTTGCTGCAGATGTGTACGAGTATCCCACACAGACCATGTGTCCGATATGCCACGAGATGATACTGACCACTGTCACACGCAGCATCACTAAGAGAACTCATCTCGCATCGCTGTGTCATGTGTCATGTTGTCATCCAGCAGGTCCTGTTGCTGCAGATGTGTACGAGTATCCCACACAGACCATGTGTCCGATATGCCACGAGATGATACTGACCACTGTCACACGCAGCATCACCAACAGAACTCATCTTGCATCTCTGCTGGCTGCTGTGCTCAGCTTCTGCCCAAGTGTATTTATCCCGTATTGTCTACCGACATGCAAGGAGACTCGACATTCTTGTCCCCGATGCAAGACGCCGATCGGCTTCCTGAATACTGCTACACCCTCTCGCTTTCATACAATCAGCAAATTCTGCTGCTCCAGGCGTGAACAAGTGGTGTAG
- Protein Sequence
- MDSYRDANAPPPYDGPGEPYYPPEKFGSPLNPEGLPHQSQGPPGYTSHGSGYAQQGYAQQEYPPPGYAPPTQASYGACTPQGVSMETSRPSAPLASADITDSPEQVKKSEAQLLMSPGCQDDAPPSYIPQDSGYPPAPAAQGYPLPPVLLTTNPQGVHTTVCDHYLAPAGPVAADVYEYPTQTMCPICHEMILTTVTRSITKRTHLASLCHVSCCHPAGPVAADVYEYPTQTMCPICHEMILTTVTRSITKRTHLASLCHVSCCHPAGPVAADVYEYPTQTMCPICHEMILTTVTRSITKRTHLASLCHVSCCHPAGPVAADVYEYPTQTMCPICHEMILTTVTRSITKRTHLASLCHVSCCHPAGPVAADVYEYPTQTMCPICHEMILTTVTRSITKRTHLASLCHVSCCHPAGPVAADVYEYPTQTTCPICHEMILTTVTRSITKRTHLASLCHVSCCHPAGPVAADVYEYPTQTMCPICHEMILTTVTRSITNRTHLASLCHVSCCHPAGPVAADVYEYPTQTMCPICHEMILTTVTRSITKRTHLASLCHVSCCHPAGPVAADVYEYPTQTTCPICHEMILTTVTRSITKRTHLASLCHVSCCHPAGPVAADVYEYPTQTMCPICHEMILTTVTRSITNRTHLASLCHVSCCHPAGPVAADVYEYPTQTTCPICHEMILTTVTRSITNRTHLASLCHVSCCHPAGPVAADVYEYPTQTMCPICHEMILTTVTRSITKRTHLASLCHVSCCHPAGPVAADVYEYPTQTMCPICHEMILTTVTRSITKRTHLASLCHVSCCHPAGPVAADVYEYPTQTMCPICHEMILTTVTRSITKRTHLASLCHVSCCHPAGPVAADVYEYPTQTMCPICHEMILTTVTRSITKRTHLASLCHVSCCHPAGPVAADVYEYPTQTMCPICHEMILTTVTRSITNRTHLASLLAAVLSFCPSVFIPYCLPTCKETRHSCPRCKTPIGFLNTATPSRFHTISKFCCSRREQVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -