Lnig040556.2
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- Zfy1
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010006381.1:5007-10934[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.1 7.3 8.4 0.6 2 23 181 202 180 202 0.95 2 18 0.27 20 7.1 0.0 1 23 248 270 248 270 0.97 3 18 0.28 20 7.1 1.4 1 23 276 298 276 298 0.96 4 18 4.3 3.1e+02 3.3 0.2 10 23 304 317 301 317 0.86 5 18 0.0068 0.48 12.1 1.9 1 23 334 356 334 356 0.98 6 18 0.66 47 5.9 0.2 5 23 366 384 364 384 0.95 7 18 0.0021 0.15 13.7 0.7 1 23 390 412 390 412 0.98 8 18 0.032 2.3 10.0 0.3 1 23 418 440 418 440 0.99 9 18 0.0072 0.52 12.1 0.8 1 23 461 483 461 483 0.98 10 18 0.02 1.4 10.7 0.2 1 23 489 511 489 511 0.96 11 18 0.00065 0.047 15.3 0.5 1 23 523 545 523 545 0.98 12 18 0.002 0.15 13.8 0.4 1 21 551 571 551 572 0.94 13 18 0.00077 0.055 15.1 0.4 1 23 585 607 585 607 0.98 14 18 0.059 4.2 9.2 0.3 1 23 613 635 613 635 0.96 15 18 0.00023 0.016 16.8 1.2 1 23 647 669 647 669 0.98 16 18 0.00098 0.07 14.8 0.8 1 23 675 697 675 697 0.97 17 18 2.6 1.8e+02 4.0 0.8 1 19 704 722 704 724 0.93 18 18 0.0055 0.4 12.4 0.2 1 20 754 773 754 775 0.93
Sequence Information
- Coding Sequence
- ATGGAAAGAAGTTGGGAACAAGGAAAGGAATTGTGGATGGCATTCTTAGATTTGGAAAAAGCATACGACCATTTGCCTCGGTGTAAAGTGTGGGAAGGTTTAGAAAAGAGGAATGTGGAGCAGGGGTTGATAGAAAGAGTAAAGAGTTTGTATGTGGGATGTGAAAGTTGTGTTGAGAGTGGTTGTGGGAAGACAGAATGGTTCTCCATAAACTCAGGAGTAAGGCAGGGAAGTGTGCTGCCGCCACTACTGTTTACGGTAGTAATGGATGCCATGATTCGGGAGGTGAGAGAAGATGGAACAGTGACGGACCAATGGGATCCCAGCAACGTGGTGGTTAAGATAGAACCGGAAGAGAGCGAAGATTATGACGTCACGAGCCAAGAGATGTATTCAACAACACCAGACAGCGGAATAAAACAAGAACCGCAAGTCAGCGAGGAGGCTGGATTCTTGCACATAGAAATAAAATCAGAGTGTCACACTGAATTCTCAAGCAACGACAGCGAACACAAAGTTTTCTCTAGAGACTCTGTCTTACCTTGTAACGCGTGTTCCTACACGACTGAATCCAAACGCAGTCTCGCCAAGCACAAGTTAAGTCACTCCTTGCGGGCGGACCAATGTGAAGAAGTTGTGTGCATGAATCCGGGCGAGCGGTCGTACGCCTGCGGTGATTGTAATTCCACGTGCGAGACCAGCGAGGAACTGGACTGTCACGAGCGATGCCACATAAAAATTTACAAGTGCGGTGAATGTGATTACGGCGCGAACAGAATGGACGCAATTATATCTCATTCGCGCGTACATACGGGCGAGCGGCCGTTTCATTGTGGCATTTGTAGTAACAAGAGCGCTACAAGCAGTGGTCTGTCTGCACATAAGACAAAACATAGAAACAACTACAAGAGCGCCACCAACGGGAATTTAGCAAAACACAAGAAAAAACATACTGGAATTAACCAGTTCAATTCTGCCAACAGTAGCACGATAAAGTTTTACAATTGCAGTAAATGTGATTACATCACGAACAGAAAGGACATACTGAAATCTCATTTGCGCAAACATTCGGGTGAGCGGCTGTTTCCCTCTGACATTTGCAGTTACAAGAGCGCTACAAGAAGCGGACTCGCACAACATAAGAAGAAGCACGTTGTCCTGAAACCTTACAAATGCAACAAGTGTGCGTACGCCACTGCTAACAGAAGTAGACTGAAAAAACACGTTCTAATACATTCCAGTGTCAAGCAGTACAAATGCAGCAAGTGTTCATATGGAGGGAACACGAGGGCGGGCATTGTGAACCATTTGCGCACACATTCGGGCCAGCAGACATTTGCTGGTGGCATTCGCAAGTTACGTCAATTCACAGAGCGGATGTACAATTGCAATGAATGTGGTTACGGAACGAACAGAAAGGACTCCTTTATATTCCATCTGCGTATTCATTCGGGTGAGCGGCCGTTTGCTTGTGACATGTGCAGTTATAAAAGTGCTACAAGCAGTGGTCTGTCTGCGCACAAGATAAGACATAAACAAAAGCTAAGTCAATTTCTGAAGCAGATGTACAATTGCAGTGAATGTGATTACGGCACGGACAGAAAGGATTCATTCGTATCCCATTTGCGCATACATTCGGGAGAGCGGCCATTTGCTTGTGATATTTGCAGATACAAGAGCGCAACAAGCAGCAATCTAACAAAACACAAGAAGATATGTATGCGGAAGCTTAGTCAGTTCACGGAGCTGATTTACAATTGCAGTCAATGTGATTACGGCACGAACACAAAGTCCGCCATGATATCTCATTTGCGCATTCATTCAGGAGAACGGCTATTTGCTTGTGACATTTGCAGCTACAAGAGCGCTACAAGCAACGGTCTGTTTGTACATAAGATAAAACATAGAATCAAGTTACGTCAATATCCGGAGCAGATCTACAATTGCTGTGAATGTGGTTACGCCACGAACAGAAGGGATTCATTGGTATCCCATTTGCGCATTCATTCAGGAGAGCGACCATTTGCTTGTAACATTTGCAGCTTTAAGAGCGCCACTAACGGAAATCTAGCAAAACACAAGAAGACACATAGTGGCACGGAGCAGGTTTACAATTGCTGTCAATGTGGTAACATAACGAGCAGAAAGGACTCAATTATATCCCATTCGAGCGAGCGGCCGTTTGCTTGTGACATTTGCAGCGACAAAAGCGCCACCTACAGCAGAATACACAACACGATACACGGCAGAGATAATTCCTTCGTGTGTCACATTTGTGCATCTGCATTCACTCGCAAAGGTGACCTTGAAAGTCACTCGTCAACAATAGCTGCCTCTCCAAGCACAGATCCACTCTTCTTGTTGTGA
- Protein Sequence
- MERSWEQGKELWMAFLDLEKAYDHLPRCKVWEGLEKRNVEQGLIERVKSLYVGCESCVESGCGKTEWFSINSGVRQGSVLPPLLFTVVMDAMIREVREDGTVTDQWDPSNVVVKIEPEESEDYDVTSQEMYSTTPDSGIKQEPQVSEEAGFLHIEIKSECHTEFSSNDSEHKVFSRDSVLPCNACSYTTESKRSLAKHKLSHSLRADQCEEVVCMNPGERSYACGDCNSTCETSEELDCHERCHIKIYKCGECDYGANRMDAIISHSRVHTGERPFHCGICSNKSATSSGLSAHKTKHRNNYKSATNGNLAKHKKKHTGINQFNSANSSTIKFYNCSKCDYITNRKDILKSHLRKHSGERLFPSDICSYKSATRSGLAQHKKKHVVLKPYKCNKCAYATANRSRLKKHVLIHSSVKQYKCSKCSYGGNTRAGIVNHLRTHSGQQTFAGGIRKLRQFTERMYNCNECGYGTNRKDSFIFHLRIHSGERPFACDMCSYKSATSSGLSAHKIRHKQKLSQFLKQMYNCSECDYGTDRKDSFVSHLRIHSGERPFACDICRYKSATSSNLTKHKKICMRKLSQFTELIYNCSQCDYGTNTKSAMISHLRIHSGERLFACDICSYKSATSNGLFVHKIKHRIKLRQYPEQIYNCCECGYATNRRDSLVSHLRIHSGERPFACNICSFKSATNGNLAKHKKTHSGTEQVYNCCQCGNITSRKDSIISHSSERPFACDICSDKSATYSRIHNTIHGRDNSFVCHICASAFTRKGDLESHSSTIAASPSTDPLFLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00895079;
- 90% Identity
- iTF_00895079;
- 80% Identity
- -