Lnig031540.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- Zfy1
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010003586.1:50713-53102[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.097 6.9 8.5 0.6 2 23 104 125 103 125 0.95 2 18 0.26 19 7.2 0.0 1 23 171 193 171 193 0.97 3 18 0.00013 0.0091 17.6 1.2 1 23 233 255 233 255 0.98 4 18 0.00077 0.055 15.1 0.8 1 23 261 283 261 283 0.97 5 18 0.0064 0.46 12.2 1.9 1 23 300 322 300 322 0.98 6 18 0.62 45 6.0 0.2 5 23 332 350 330 350 0.95 7 18 0.002 0.14 13.8 0.7 1 23 356 378 356 378 0.98 8 18 0.03 2.2 10.1 0.3 1 23 384 406 384 406 0.99 9 18 0.0069 0.49 12.1 0.8 1 23 427 449 427 449 0.98 10 18 0.019 1.4 10.7 0.2 1 23 455 477 455 477 0.96 11 18 0.00062 0.044 15.4 0.5 1 23 489 511 489 511 0.98 12 18 0.0019 0.14 13.9 0.4 1 21 517 537 517 538 0.94 13 18 0.00073 0.052 15.2 0.4 1 23 551 573 551 573 0.98 14 18 0.056 4 9.3 0.3 1 23 579 601 579 601 0.96 15 18 0.00022 0.016 16.8 1.2 1 23 613 635 613 635 0.98 16 18 0.00094 0.067 14.8 0.8 1 23 641 663 641 663 0.97 17 18 2.4 1.7e+02 4.1 0.8 1 19 670 688 670 690 0.93 18 18 0.0053 0.38 12.5 0.2 1 20 720 739 720 741 0.93
Sequence Information
- Coding Sequence
- atgAATATTCACTTCCAAAGACATGAGCTGGCTTACGACGGTATAACTTTAGATATTAGAGAAGATGGAACAGTGACGGACCAATGGGATCCCAGCAACGTGGTGGTTAAGATAGAACCGGAAGAGAGCGAAGATTATGACGTCACGAGCCAAGAGATGTATTCAACAACACCAGACAGCGGAATAAAACAAGAACCGCAAGTCAGCGAGGAGGCTGGATTCTTGCACATAGAAATAAAATCAGAGTGTCACACTGAATTCTCAAGCAACGACAGCGATCACAAAGTTTTCTCTAGAGACTCTGTCTTACCTTGTAACGCGTGTTCCTACACGACTGAATCAAAACGCAGTCTCGCCAAGCACAAGTTAAGTCACTCCTTGCGGGCGGACCAATGTGAAGAAGTTGTGTGCATGAATCCGGGCGAGCGGTCGTACGCCTGCGGTGATTGTAATTCCACGTGCGAGACCAGCGAGGAACTGGACTGTCACGAGCGATGCCACATAAAAATTTACAAGTGCGGTGAATGTGATTACGGCGCGAACAGAATGGACGCAATTATATCTCATTCGCGCGTACATACGGGCGAGCGGCCGTTTCATTGTGGCATTTATAGTTACAAGAGCGCTACAAGCAGTGGTCTGTCTGCACATAAGACAAAACATAGAAACAAGTTAAGTCAATATCCGGAGCAGATATACAATTGCTGTGAATGTGGTTACGCCACGAACCGAAGGGATTCATTGATATCCCATTTGCGTATACATTCGGGAGAGCGTCCATTTGCTTGTAACATTTGCAGCTACAAGAGCGCCACCAACGGGAATTTAGCAAAACACAAGAAAAAACATACTGGAATTAACCAGCTCAATTCTGCCAACAGTAGCACGATAAAGTTTTACAATTGCAGTAAATGTGATTACATCACGAACAGAAAGGACATACTGAAATCTCATTTGCGCAAACATTCGGGTGAGCGGCTGTTTCCCTCTGACATTTGCAGTTACAAGAGCGCTACAAGAAGCGGACTCGCACAACATAAGAAGAAGCACGTTGTCCTGAAACCTTACAAATGCAACAAGTGTGCGTACGCCACTGCTAACAGAAGTAGACTGAAAAAACACGTTCTAATACATTCCAGTGTCAAGCAGTACAAATGCAGCAAGTGTTCATATGGAGGGAACACGAGGGCGGGCATTGTGAACCATTTGCGCACACATTCGGGCCAGCAGACATTTGCTGGTGGCATTCGCAAGTTACGTCAATTCACAGAGCGGATGTACAATTGCAATGAATGTGGTTACGGAACGAACAGAAAGGACTCCTTTATATTCCATCTGCGTATTCATTCGGGTGAGCGGCCGTTTGCTTGTGACATGTGCAGTTATAAAAGTGCTACAAGCAGTGGTCTGTCTGCGCACAAGATAAGACATAAACAAAAGCTAAGTCAATTTCTGAAGCAGATGTACAATTGCAGTGAATGTGATTACGGCACGGACAGAAAGGATTCATTCGTATCCCATTTGCGCATACATTCGGGAGAGCGGCCATTTGCTTGTGATATTTGCAGATACAAGAGCGCAACAAGCAGCAATCTAACAAAACACAAGAAGATATGTATGCGGAAGCTTAGTCAGTTCACGGAGCTGATTTACAATTGCAGTCAATGTGATTACGGCACGAACACAAAGTCCGCCATGATATCTCATTTGCGCATTCATTCAGGAGAACGGCTATTTGCTTGTGACATTTGCAGCTACAAGAGCGCTACAAGCAACGGTCTGTTTGTACATAAGATAAAACATAGAATCAAGTTACGTCAATATCCGGAGCAGATCTACAATTGCTGTGAATGTGGTTACGCCACGAACAGAAGGGATTCATTGGTATCCCATTTGCGCATTCATTCAGGAGAGCGACCATTTGCTTGTAACATTTGCAGCTTTAAGAGCGCCACTAACGGAAATCTAGCAAAACACAAGAAGACACATAGTGGCACGGAGCAGGTTTACAATTGCTGTCAATGTGGTAACATAACGAGCAGAAAGGACTCAATTATATCCCATTCGAGCGAGCGGCCGTTTGCTTGTGACATTTGCAGCGACAAAAGCGCCACCTACAGCAGAATACACAACACGATACACGGCAGAGATAATTCCTTCGTGTGTCACATTTGTGCATCTGCATTCACTCGCAAAGGTGACCTTGAAAGTCACTCGTCAACAATAGCTGCCTCTCCAAGCACAGATCCACTCTTCTTGTTGTGA
- Protein Sequence
- MNIHFQRHELAYDGITLDIREDGTVTDQWDPSNVVVKIEPEESEDYDVTSQEMYSTTPDSGIKQEPQVSEEAGFLHIEIKSECHTEFSSNDSDHKVFSRDSVLPCNACSYTTESKRSLAKHKLSHSLRADQCEEVVCMNPGERSYACGDCNSTCETSEELDCHERCHIKIYKCGECDYGANRMDAIISHSRVHTGERPFHCGIYSYKSATSSGLSAHKTKHRNKLSQYPEQIYNCCECGYATNRRDSLISHLRIHSGERPFACNICSYKSATNGNLAKHKKKHTGINQLNSANSSTIKFYNCSKCDYITNRKDILKSHLRKHSGERLFPSDICSYKSATRSGLAQHKKKHVVLKPYKCNKCAYATANRSRLKKHVLIHSSVKQYKCSKCSYGGNTRAGIVNHLRTHSGQQTFAGGIRKLRQFTERMYNCNECGYGTNRKDSFIFHLRIHSGERPFACDMCSYKSATSSGLSAHKIRHKQKLSQFLKQMYNCSECDYGTDRKDSFVSHLRIHSGERPFACDICRYKSATSSNLTKHKKICMRKLSQFTELIYNCSQCDYGTNTKSAMISHLRIHSGERLFACDICSYKSATSNGLFVHKIKHRIKLRQYPEQIYNCCECGYATNRRDSLVSHLRIHSGERPFACNICSFKSATNGNLAKHKKTHSGTEQVYNCCQCGNITSRKDSIISHSSERPFACDICSDKSATYSRIHNTIHGRDNSFVCHICASAFTRKGDLESHSSTIAASPSTDPLFLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00895135;
- 90% Identity
- iTF_00895135;
- 80% Identity
- -