Basic Information

Insect: Leuctra nigra
Gene Symbol: -
Assembly: GCA_934046545.1
Location: CAKOHC010000088.1:1-14508[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00093 0.066 14.9 1.9 2 23 199 220 198 220 0.98

2 17 5.3e-05 0.0038 18.8 0.4 1 23 226 248 226 248 0.98

3 17 0.00043 0.03 15.9 4.1 1 23 254 276 254 276 0.98

4 17 0.0015 0.11 14.2 0.4 1 23 282 304 282 304 0.95

5 17 0.00015 0.01 17.4 2.7 1 23 310 333 310 333 0.93

6 17 0.18 13 7.7 0.2 1 23 339 361 339 361 0.97

7 17 0.00027 0.019 16.6 1.1 1 23 367 390 367 390 0.96

8 17 7.5e-07 5.4e-05 24.6 0.4 2 23 399 420 398 420 0.97

9 17 0.056 4 9.2 0.4 2 23 428 449 427 449 0.97

10 17 0.00012 0.0089 17.6 0.8 1 23 455 477 455 477 0.99

11 17 0.011 0.76 11.5 2.0 1 21 483 503 483 506 0.95

12 17 0.0051 0.36 12.5 1.5 1 23 511 534 511 534 0.96

13 17 0.0032 0.23 13.2 1.2 2 23 543 565 543 565 0.96

14 17 0.00017 0.012 17.2 1.4 3 23 572 592 571 592 0.97

15 17 0.001 0.072 14.7 0.2 1 23 598 620 598 620 0.98

16 17 0.0086 0.61 11.8 0.0 1 23 623 645 623 645 0.96

17 17 0.0003 0.021 16.4 3.2 1 23 651 673 651 673 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00093	0.066	14.9	1.9	2	23	199	220	198	220	0.98
2	17	5.3e-05	0.0038	18.8	0.4	1	23	226	248	226	248	0.98
3	17	0.00043	0.03	15.9	4.1	1	23	254	276	254	276	0.98
4	17	0.0015	0.11	14.2	0.4	1	23	282	304	282	304	0.95
5	17	0.00015	0.01	17.4	2.7	1	23	310	333	310	333	0.93
6	17	0.18	13	7.7	0.2	1	23	339	361	339	361	0.97
7	17	0.00027	0.019	16.6	1.1	1	23	367	390	367	390	0.96
8	17	7.5e-07	5.4e-05	24.6	0.4	2	23	399	420	398	420	0.97
9	17	0.056	4	9.2	0.4	2	23	428	449	427	449	0.97
10	17	0.00012	0.0089	17.6	0.8	1	23	455	477	455	477	0.99
11	17	0.011	0.76	11.5	2.0	1	21	483	503	483	506	0.95
12	17	0.0051	0.36	12.5	1.5	1	23	511	534	511	534	0.96
13	17	0.0032	0.23	13.2	1.2	2	23	543	565	543	565	0.96
14	17	0.00017	0.012	17.2	1.4	3	23	572	592	571	592	0.97
15	17	0.001	0.072	14.7	0.2	1	23	598	620	598	620	0.98
16	17	0.0086	0.61	11.8	0.0	1	23	623	645	623	645	0.96
17	17	0.0003	0.021	16.4	3.2	1	23	651	673	651	673	0.98

Sequence Information

Coding Sequence: ATGGTGTTTTTGTCACCAGATTTAGTGTCAAGAGCCTGCCAGGAGCAAGACCGCAACACGTTGTGTCGACTATGCATGGCTCATCTCAACGAAGGCGCCTTCAAACTACAGATGTTCAACTCTGTCAGTCCGTTGGCTCCCACTGTCACTTACGTTACGCAGCTAACGATGAACGAAGAAGACGGTCTGCCTCCGTCACTCTGTCAGACTTGCTTCTGTCATGTCACTTTGTTTGCGGAGTTCAAGAGGAAGTGTGCTTCGAGCGATGAGTCACTCCGTCAACTGTTCTTGCAACCACCTCGTTTAGCACTACGTCCACTGTTTGATGTGCCATCTAGTCAGGGACCCGTCCTCGCTAACGCAGCGACAATCAGCGAGTACGTCATGATCGTGGACAAAGATCATCTCGTTCTCGACGCAGCGGACCCGAGTGTCAAGCAGGAGGCCGTCGCTGAGCAGTCGGATGACGACCACGGTGATGACGGATATGAGCCGGCCATGGAGGAGTTCCTGAAGTACAAAGCTCTTGACGACTCCACCGCAGCCGCCCCTCAGCCCGCCTCGTCCCCTGCCAAGCCAAGCCGCAAGCCGAACCAGTGCAAATACTGCGAGCAAGTCTTCCCGGACGCCAAGACACTCCACCAACACAAGCTCACCCACACCGGCCCCAAGAAGTACGTCTGCCAACTGTGCAACAAGTTGTTCAAGACCCCCATGAATCTCCGAGACCACGTCAACATCCACTCCGGAATCAACGAACACCAGTGCGAACTCTGCCACAGAAACCTCAGCTCAAAGAACGCGCTCAAAACCCACATGCGTGTCCATACGGAAATGCGCCCCTTCGAATGCGACCACTGCAAGATGCGGTTCAAGGACATCCCGGGGCTTCGAGTGCATATGGTGGCCCACATGCCCGATCGTCCGTTCAGTTGTCCGATCTGTGAGAAGAGGTTCAAACGTAAGGGCGGTTTGCGGTTGCATAAGCTGCACAAGCACGCGGAGACTCGAGATTATATTTGCAGTGTTTGCGGAAGTGCTCATCCGACGGAGCGTTATCTCAAGAACCATATGGCGATTCACGACACGGTGGCGTCGCATATGTGTGAACTCTGCGGGGAAGTTTTCCCTACCAAAGGAAAGCTGCAGTATCATACGTCGACGAGGCACAAAGAGAATGTGGACAGCGAGAAAACCTGCACGATATGCGGGAAGGTTTTCGCGAGGATTTCGAATCTGAAGGAGCACATGGCGAGGCATAAAGAAGAGAAGCAAATGCTCCAATGCGAGGTCTGTAAGAAGTGGTTGAATAGTAAGAGCAATGTTGCCAAACATCTTTTAAGACACACCGGCGTGAAGGATTTCCAGTGCGTCGTCTGCAGTCGGCGCTTCATCGACATTTACTCGCTTCAGCTTCACATGAAGAGACATTCCGACGAGCGGCCGTTCGCCTGCGACCAGTGCGACGCCACATTCAAGCTCCGGGGCGGTCTTCGGAATCACATGAAGTGCAAACATCTCGAGAAGAAGTTCAAGTGCAACATCTGCGAGAAGACATATGGGATTGTATCGGCATTGAAGACGCATCTGAAGCACAACCATCTGGGCGCGAAGTACACAGAGGCGCGATGCAATGATTGCGGCCTGTCGTTCGAAAAGCGAACGGAAAAAAGCAAACATATGAAGGAGGTCCACGGGAACGCCGAGAGGTCCTGCGTCATCTGCAACAAGCATTTCCAGGATCAAGCTGGCCTGGCAAAGCACATGAAACGGCACGAGGACGGCACGACGTACGAGTGTGAGATATGCGCTACGGATTACAACTCCCTGCAGGAGCTGACGAGGCACATGGCCAAGCACCGCATGTTTGCGTGCGGGGTTTGCGGCGAGGACTACATCGACGACGAGGAGCTAAAGTCACACATGGCGCTGCACGATGACGAGGTCACATTCCCGTGTCAACAATGCAGTAACTGCTTCAAGGATAAGGCGGAGCTTAGAGCCCACAAGAGGAGGCACAAGACTGTGGGAAAAACAGAGAAACTTGTTAAGTGGATACTTGAACAAATAAAGTATGAAGAACAGGGTggaatgaagaagaagatgaaacaaAATAGGCATCGAGTATTGAAGTCAGAAGTCGTCAAGGGAATAGTAGCAACGTTCATGTGGATGGAAGGTAGGCTGCAAGAGATGGAGAAACAACTAGAAGAAGTTCGGTCAAGTCAGTcagaccagggcagcagcgacctgagtgggccgaacatcgcaccgagtgacgtgggcagcagcgacctgagtgggccgaacatcgcaccgagtgacgtgggcagcagtgacctgagtgggccgaacatcgctccgagtgacgtgggcagcagtgacctgagtgggccgaacatcgcaccgagtgaccagggcagcaccgacctgagtgaaccgaacatcgcaccgagtgaccagggcagcaccgacctgagtgaaccgaacatcgcaccgagtgaccagggcagcaccgacctgagtgaaccgaacatcgcaccgagtgaccagggcagcaccgacctgagtgaaccgaacatcacaccgagtgaccagggcagcagcgacctgagtgggccaaacatcgcaccgagtgacgtgggcagcagcgacctgagtgaaccgaacatcgcaccgagtgaccagggcagcagcgacctgagtgggccgaacatcgcaccgagtgacgtgggcagcagcgacctgagtgaaccgaacattgcactgagtgaccagggcagcagcaaCCCGAGTGGGCCCAGCAATGACGGCAGAGAGTCGGGTGGCCGGAGCAACGGCGGGACTGAGTGCCACCTCTTGTTAGGGGACATCAGTGGCAGTATGGGGGTTGGGTTCTGCGCTGATCAGGCAGGTTTTCGGGCGCATCAGCTGCCTGGAATTCGCATCCAGAAGCTGTCTAGTGAGATGGAAAACTACTGCATTAGAGAAGAACCAGTGACGGTTACGTTGTTTGTTGGCACTCGGGACTTGCTTGAGGGAAGGAGTAGGAATGACATTATGGATGATGTGAGGGAGTTACTGAAGGCAGTGAAGAGCAGATTTGGAGTGTCATGCAAAGTTTACATGGCTAGCATGCTGACGGGGAAAGGGAGTGGTCCCAGAGAGTTGAATAATTGTGTCAGAGCCGTGTGTAAGGAACAAG
Protein Sequence: MVFLSPDLVSRACQEQDRNTLCRLCMAHLNEGAFKLQMFNSVSPLAPTVTYVTQLTMNEEDGLPPSLCQTCFCHVTLFAEFKRKCASSDESLRQLFLQPPRLALRPLFDVPSSQGPVLANAATISEYVMIVDKDHLVLDAADPSVKQEAVAEQSDDDHGDDGYEPAMEEFLKYKALDDSTAAAPQPASSPAKPSRKPNQCKYCEQVFPDAKTLHQHKLTHTGPKKYVCQLCNKLFKTPMNLRDHVNIHSGINEHQCELCHRNLSSKNALKTHMRVHTEMRPFECDHCKMRFKDIPGLRVHMVAHMPDRPFSCPICEKRFKRKGGLRLHKLHKHAETRDYICSVCGSAHPTERYLKNHMAIHDTVASHMCELCGEVFPTKGKLQYHTSTRHKENVDSEKTCTICGKVFARISNLKEHMARHKEEKQMLQCEVCKKWLNSKSNVAKHLLRHTGVKDFQCVVCSRRFIDIYSLQLHMKRHSDERPFACDQCDATFKLRGGLRNHMKCKHLEKKFKCNICEKTYGIVSALKTHLKHNHLGAKYTEARCNDCGLSFEKRTEKSKHMKEVHGNAERSCVICNKHFQDQAGLAKHMKRHEDGTTYECEICATDYNSLQELTRHMAKHRMFACGVCGEDYIDDEELKSHMALHDDEVTFPCQQCSNCFKDKAELRAHKRRHKTVGKTEKLVKWILEQIKYEEQGGMKKKMKQNRHRVLKSEVVKGIVATFMWMEGRLQEMEKQLEEVRSSQSDQGSSDLSGPNIAPSDVGSSDLSGPNIAPSDVGSSDLSGPNIAPSDVGSSDLSGPNIAPSDQGSTDLSEPNIAPSDQGSTDLSEPNIAPSDQGSTDLSEPNIAPSDQGSTDLSEPNITPSDQGSSDLSGPNIAPSDVGSSDLSEPNIAPSDQGSSDLSGPNIAPSDVGSSDLSEPNIALSDQGSSNPSGPSNDGRESGGRSNGGTECHLLLGDISGSMGVGFCADQAGFRAHQLPGIRIQKLSSEMENYCIREEPVTVTLFVGTRDLLEGRSRNDIMDDVRELLKAVKSRFGVSCKVYMASMLTGKGSGPRELNNCVRAVCKEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00895024;
90% Identity: iTF_00895024;
80% Identity: -