Basic Information

Insect: Leuctra nigra
Gene Symbol: -
Assembly: GCA_934046545.1
Location: CAKOHC010002850.1:89216-99525[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.00086 0.062 15.0 1.9 2 23 34 55 33 55 0.98

2 20 4.9e-05 0.0035 18.9 0.4 1 23 61 83 61 83 0.98

3 20 0.0004 0.028 16.0 4.1 1 23 89 111 89 111 0.98

4 20 0.0014 0.098 14.3 0.4 1 23 117 139 117 139 0.95

5 20 0.00014 0.0097 17.5 2.7 1 23 145 168 145 168 0.94

6 20 0.17 12 7.8 0.2 1 23 174 196 174 196 0.97

7 20 0.00025 0.018 16.7 1.1 1 23 202 225 202 225 0.96

8 20 7e-07 5e-05 24.7 0.4 2 23 234 255 233 255 0.97

9 20 0.052 3.7 9.3 0.4 2 23 263 284 262 284 0.97

10 20 0.00012 0.0083 17.7 0.8 1 23 290 312 290 312 0.99

11 20 0.0099 0.71 11.6 2.0 1 21 318 338 318 341 0.95

12 20 0.0047 0.34 12.6 1.5 1 23 346 369 346 369 0.96

13 20 0.003 0.21 13.3 1.2 2 23 378 400 378 400 0.96

14 20 0.00016 0.011 17.3 1.4 3 23 407 427 406 427 0.97

15 20 0.00094 0.067 14.8 0.2 1 23 433 455 433 455 0.98

16 20 0.008 0.57 11.9 0.0 1 23 458 480 458 480 0.96

17 20 0.00028 0.02 16.5 3.2 1 23 486 508 486 508 0.98

18 20 0.00037 0.026 16.1 4.3 1 23 907 929 907 929 0.98

19 20 1.6 1.1e+02 4.7 0.2 1 23 936 958 936 958 0.89

20 20 0.00025 0.018 16.7 0.7 1 23 963 985 963 985 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.00086	0.062	15.0	1.9	2	23	34	55	33	55	0.98
2	20	4.9e-05	0.0035	18.9	0.4	1	23	61	83	61	83	0.98
3	20	0.0004	0.028	16.0	4.1	1	23	89	111	89	111	0.98
4	20	0.0014	0.098	14.3	0.4	1	23	117	139	117	139	0.95
5	20	0.00014	0.0097	17.5	2.7	1	23	145	168	145	168	0.94
6	20	0.17	12	7.8	0.2	1	23	174	196	174	196	0.97
7	20	0.00025	0.018	16.7	1.1	1	23	202	225	202	225	0.96
8	20	7e-07	5e-05	24.7	0.4	2	23	234	255	233	255	0.97
9	20	0.052	3.7	9.3	0.4	2	23	263	284	262	284	0.97
10	20	0.00012	0.0083	17.7	0.8	1	23	290	312	290	312	0.99
11	20	0.0099	0.71	11.6	2.0	1	21	318	338	318	341	0.95
12	20	0.0047	0.34	12.6	1.5	1	23	346	369	346	369	0.96
13	20	0.003	0.21	13.3	1.2	2	23	378	400	378	400	0.96
14	20	0.00016	0.011	17.3	1.4	3	23	407	427	406	427	0.97
15	20	0.00094	0.067	14.8	0.2	1	23	433	455	433	455	0.98
16	20	0.008	0.57	11.9	0.0	1	23	458	480	458	480	0.96
17	20	0.00028	0.02	16.5	3.2	1	23	486	508	486	508	0.98
18	20	0.00037	0.026	16.1	4.3	1	23	907	929	907	929	0.98
19	20	1.6	1.1e+02	4.7	0.2	1	23	936	958	936	958	0.89
20	20	0.00025	0.018	16.7	0.7	1	23	963	985	963	985	0.98

Sequence Information

Coding Sequence: ATGTTTCAGGAGTTCCTGAAGTACAAAGCTCTTGACGACTCCACCGCAGCCGCCCCTCAGCCCGCCTCGTCCCCTGCCAAGCCAAGCCGCAAGCCGAACCAGTGCAAATACTGCGAGCAAGTCTTCCCGGACGCCAAGACACTCCACCAACACAAGCTCACCCACACCGGCCCCAAGAAGTACGTCTGCCAACTGTGCAACAAGTTGTTCAAGACCCCCATGAATCTCCGAGACCACGTCAACATCCACTCCGGAATCAACGAACACCAGTGCGAACTCTGCCACAGAAACCTCAGCTCAAAGAACGCGCTCAAAACCCACATGCGTGTCCATACGGAAATGCGCCCCTTCGAATGCGACCACTGCAAGATGCGGTTCAAGGACATCCCGGGGCTTCGAGTGCATATGGTGGCCCACATGCCCGATCGTCCGTTCAGTTGTCCGATCTGTGAGAAGAGGTTCAAACGTAAGGGCGGTTTGCGGTTGCATAAGCTGCACAAGCACGCGGAGACTCGAGATTATATTTGCAGTGTTTGCGGAAGTGCTCATCCGACGGAGCGTTATCTCAAGAACCATATGGCGATTCACGACACGGTGGCGTCGCATATGTGTGAACTCTGCGGGGAAGTTTTCCCTACCAAAGGAAAGCTGCAGTATCATACGTCGACGAGGCACAAAGAGAATGTGGACAGCGAGAAAACCTGCACGATATGCGGGAAGGTTTTCGCGAGGATTTCGAATCTGAAGGAGCACATGGCGAGGCATAAAGAAGAGAAGCAAATGCTCCAATGCGAGGTCTGTAAGAAGTGGTTGAATAGTAAGAGCAATGTTGCCAAACATCTTTTAAGACACACCGGCGTGAAGGATTTCCAGTGCGTCGTCTGCAGTCGGCGCTTCATCGACATTTACTCGCTTCAGCTTCACATGAAGAGACATTCCGACGAGCGGCCGTTCGCCTGCGACCAGTGCGACGCCACATTCAAGCTCCGGGGCGGTCTTCGGAATCACATGAAGTGCAAACATCTCGAGAAGAAGTTCAAGTGCAACATCTGCGAGAAGACATATGGGATTGTATCGGCATTGAAGACGCATCTGAAGCACAACCATCTGGGCGCGAAGTACACAGAGGCGCGATGCAATGATTGCGGCCTGTCGTTCGAAAAGCGAACGGAAAAAAGCAAACATATGAAGGAGGTCCACGGGAACGCCGAGAGGTCCTGCGTCATCTGCAACAAGCATTTCCAGGATCAAGCTGGCCTGGCAAAGCACATGAAACGGCACGAGGACGGCACGACGTACGAGTGTGAGATATGCGCTACGGATTACAACTCCCTGCAGGAGCTGACGAGGCACATGGCCAAGCACCGCATGTTTGCGTGCGGGGTTTGCGGCGAGGACTACATCGACGACGAGGAGCTAAAGTCACACATGGCGCTGCACGATGACGAGGTCACATTCCCGTGTCAACAATGCAGTAACTGCTTCAAGGATAAGGCGGAGCTTAGAGCCCACAAGAGGAGGCACAAGACTGTGGGAAAAACAGAGAAACTTGTTAAGTGGATACTTGAACAAATAAAGTATGAAGAACAGGGTggaatgaagaagaagatgaaacaaAATAGGCATCGAGTATTGAAGTCAGAAGTCGTCAAGGGAATAGTAGCAACGTTCATGTGGATGGAAGGTAGGCTGCAAGAGATGGAGAAACAACTAGAAGAAGTTCGGTCAAGTCAGTcagaccagggcagcagcgacctgagtgggccgaacatcgcaccgagtgacgtgggcagcagcgacctgagtgggccgaacatcgcaccgagtgacgtgggcagcagtgacctgagtgggccgaacatcgctccgagtgacgtgggcagcagtgacctgagtgggccgaacatcgcaccgagtgaccagggcagcaccgacctgagtgaaccgaacatcgcaccgagtgaccagggcagcaccgacctgagtgaaccgaacatcgcaccgagtgaccagggcagcaccgacctgagtgaaccgaacatcgcaccgagtgaccagggcagcaccgacctgagtgaaccgaacatcacaccgagtgaccagggcagcagcgacctgagtgggccaaacatcgcaccgagtgacgtgggcagcagcgacctgagtgaaccgaacatcgcaccgagtgaccagggcagcagcgacctgagtgggccgaacatcgcaccgagtgacgtgggcagcagcgacctgagtgaaccgaacattgcactgagtgaccagggcagcagcaaCCCGAGTGGGCCCAGCAATGACGGCAGAGAGTCGGGTGGCCGGAGCAACGGCGGGACTGAGTGCCACCTCTTGTTAGGGGACATCAGTGGCAGTATGGGGGTTGGGTTCTGCGCTGATCAGGCAGGTTTTCGGGCGCATCAGCTGCCTGGAATTCGCATCCAGAAGCTGTCTAGTGAGATGGAAAACTACTGCATTAGAGAAGAACCAGTGACGGTTACGTTGTTTGTTGGCACTCGGGACTTGCTTGAGGGAAGGAGTAGGAATGACATTATGGATGATGTGAGGGAGTTACTGAAGGCAGTGAAGAGCAGATTTGGAGTGTCATGCAAAGTTTACATGGCTAGCATGCTGACGGGGAAAGGGAGTGGTCCCAGAGAGTTGAATAATTGTGTCAGAGCCGCAAGACATTACGGCAAGCGGACGTTCTCCTGCCGCCACTGCGACCAGACGTTCACCAACAAGGACAGCCGCCGACGACACGTGGCGACCCACGGGCCGGACGGCACCGTCTTCAAGTGTCGGATCTGCGGCGAGGAGTCGGAGGACGGTGCGGCCTACAGTCTGCACCGACAGTTCCACGCCGAGACCCAGTTCAAGTGCGGCGTGTGCAGCGAGTCGTTCGGCAAGCGCAGTGACCTGCAAACACATTTCAATGTGCACATCGCGGTGCTACCCAATGTGGAGGTCGGGGAGAGCGTGGATGTTTAG
Protein Sequence: MFQEFLKYKALDDSTAAAPQPASSPAKPSRKPNQCKYCEQVFPDAKTLHQHKLTHTGPKKYVCQLCNKLFKTPMNLRDHVNIHSGINEHQCELCHRNLSSKNALKTHMRVHTEMRPFECDHCKMRFKDIPGLRVHMVAHMPDRPFSCPICEKRFKRKGGLRLHKLHKHAETRDYICSVCGSAHPTERYLKNHMAIHDTVASHMCELCGEVFPTKGKLQYHTSTRHKENVDSEKTCTICGKVFARISNLKEHMARHKEEKQMLQCEVCKKWLNSKSNVAKHLLRHTGVKDFQCVVCSRRFIDIYSLQLHMKRHSDERPFACDQCDATFKLRGGLRNHMKCKHLEKKFKCNICEKTYGIVSALKTHLKHNHLGAKYTEARCNDCGLSFEKRTEKSKHMKEVHGNAERSCVICNKHFQDQAGLAKHMKRHEDGTTYECEICATDYNSLQELTRHMAKHRMFACGVCGEDYIDDEELKSHMALHDDEVTFPCQQCSNCFKDKAELRAHKRRHKTVGKTEKLVKWILEQIKYEEQGGMKKKMKQNRHRVLKSEVVKGIVATFMWMEGRLQEMEKQLEEVRSSQSDQGSSDLSGPNIAPSDVGSSDLSGPNIAPSDVGSSDLSGPNIAPSDVGSSDLSGPNIAPSDQGSTDLSEPNIAPSDQGSTDLSEPNIAPSDQGSTDLSEPNIAPSDQGSTDLSEPNITPSDQGSSDLSGPNIAPSDVGSSDLSEPNIAPSDQGSSDLSGPNIAPSDVGSSDLSEPNIALSDQGSSNPSGPSNDGRESGGRSNGGTECHLLLGDISGSMGVGFCADQAGFRAHQLPGIRIQKLSSEMENYCIREEPVTVTLFVGTRDLLEGRSRNDIMDDVRELLKAVKSRFGVSCKVYMASMLTGKGSGPRELNNCVRAARHYGKRTFSCRHCDQTFTNKDSRRRHVATHGPDGTVFKCRICGEESEDGAAYSLHRQFHAETQFKCGVCSESFGKRSDLQTHFNVHIAVLPNVEVGESVDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00895034;
90% Identity: iTF_00895034;
80% Identity: -