Lnig040356.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- spopl
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010006369.1:72607-76206[+]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.7e-26 6.1e-24 85.5 0.1 3 107 29 135 27 138 0.94 2 5 5.5 2e+03 0.1 0.0 90 107 155 174 142 177 0.75 3 5 5.3 1.9e+03 0.2 0.0 90 107 194 213 180 216 0.75 4 5 5.3 1.9e+03 0.2 0.0 90 107 233 252 219 255 0.75 5 5 4.9 1.8e+03 0.3 0.0 90 107 272 291 258 294 0.76
Sequence Information
- Coding Sequence
- ATGTCTTTTCATTTAGTTGAAAAGTCCAAGGCACCGAGTTCAGTCCCCTTCTTGCGCTCACAGACACTCTCAGCCAACTTCCTCCAGCTTCTCACCGACGGAGAGTTCTCTGACGTCACTCTAAAAGTTGACGGCGAAGCTATAAAAGCTCACAAGTGCATCCTTGCAAGTCGCAGTCCTGTTTTCGCCGCCATGTTGAAAGCTGACATGGCAGAGTCCAACAGTGGCGCGATCGTGATCAAGGACTTCAAGGAGGCTGTGATGAAGATTTTGCTGAGATTCATCTACTCGGGATGTTTGGATGACAACAGCGAGCTCAACCAGGATCTGATGCTGGACCTAATGAGAGCTGCTGATAAGTACGACGTCCCCGACTTGATACATGTCTGCTCCTCGGCGTTGGCGAGAATCATCACCGTGGAGAATGTCACTCAACTGAGGTCCGTGTCTTGTCTGTACCACGCGACTAAACTTCTTTACGACGTCCCCGACTTGATACATGTCTGCTCCTCGGCGTTGGCGAGAATCATCACCGTGGAGAATGTCACTCAACTGAGGTCCGTGTCTTGTCTGTACCACGCGACTAAACTTCTTTACGACGTCCCCGACTTGATACATGTCTGCTCCTCGGCGTTGGCGAGAATCATCACCGTGGAGAATGTCACTCAACTGAGGTCCGTGTCTTGTCTGTACCACGCGACTAAACTTCTTTACGACGTCCCCGACTTGATACATGTCTGCTCCTCGGCGTTGGCGAGAATCATCACCGTGGAGAATGTCACTCAACTGAGGTCCGTGTCTTGTCTGTACCACGCGATTAAACTTCTTTACGATGTCCCCGACTTGATACATGTCTGCTCCTCGGCGTTGGTGAGAATCATCACCGTGGAGAATGTCACTCAACTGAGGTCCGTGTCTTGTCTGTACCACGCAACTAAACTGACCACAGCCGCTGATCTCTTCATACGCACAAATATGCGTGACGTGTCGAAGACTGAAGGATGGAAGGAAATGAAGAGGACAAATCCTGAAGCTGCTATCAAGTTAATCGAGAGTGTCTTGTGTATCAGCTGCACGCAGAATGTCGGCGCTCCGTCACGCACCTACCGCTACTGA
- Protein Sequence
- MSFHLVEKSKAPSSVPFLRSQTLSANFLQLLTDGEFSDVTLKVDGEAIKAHKCILASRSPVFAAMLKADMAESNSGAIVIKDFKEAVMKILLRFIYSGCLDDNSELNQDLMLDLMRAADKYDVPDLIHVCSSALARIITVENVTQLRSVSCLYHATKLLYDVPDLIHVCSSALARIITVENVTQLRSVSCLYHATKLLYDVPDLIHVCSSALARIITVENVTQLRSVSCLYHATKLLYDVPDLIHVCSSALARIITVENVTQLRSVSCLYHAIKLLYDVPDLIHVCSSALVRIITVENVTQLRSVSCLYHATKLTTAADLFIRTNMRDVSKTEGWKEMKRTNPEAAIKLIESVLCISCTQNVGAPSRTYRY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -