Lnig017460.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010001514.1:149259-155787[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3e-24 8.9e-20 72.4 0.5 222 300 6 83 3 83 0.91 2 2 0.0019 41 4.5 3.5 120 172 81 133 80 139 0.92
Sequence Information
- Coding Sequence
- atggtggatgaaaatgACGTGAGATTGCGACGGCTGGCGGAGGACCGGGACGACCTCGCCGACCAGGTGCGCCGGCTGCAGCTGGAGCTGGAGGAGGGGCGGAGTCAGCGCAGGTCCGGCGGCCAATCGGCGCCCACCGTCAACGGCGGTGTCGGCCTCGTCGAGGTGGAGGAAGCGCAACGCGAGACAAACAAACTCCTTGCGGACTACAGGTTCAAGCTGCAGAAGGCGGAGCAGGACGTGGCAACGCTGCAGGCCAGCGTGGCGCGCCTCGAGAGCCAGGTGGTGCGCTACAAGGGCGCCTCCGAGTCCTCCGAGAAGGTGGAGGACGAACTCAAGGTCGAGAAGCGGAAGCTGCAGAGAGAGCTGCGCGAGGCCCAGGTGCGCGTGGAGGAGCTGGAGACGACCAACTCGCACTACCAGCGGCGCTTCGACAAGCTCAAGAACGCCAAGTCGACGCTGCTCAAGGAGCTCTGA
- Protein Sequence
- MVDENDVRLRRLAEDRDDLADQVRRLQLELEEGRSQRRSGGQSAPTVNGGVGLVEVEEAQRETNKLLADYRFKLQKAEQDVATLQASVARLESQVVRYKGASESSEKVEDELKVEKRKLQRELREAQVRVEELETTNSHYQRRFDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -