Basic Information

Transcription Factor Domain

TF Family: RHD
Domain: RHD domain
PFAM: PF00554
TF Group: Beta-Scaffold Factors
Description: Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal DNA-binding domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See PF16179) that functions as a dimerisation domain [1-2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 0.38 5.3e+03 -1.6 0.0 83 110 72 100 60 126 0.59

2 2 3.7e-12 5.2e-08 34.2 0.1 1 45 171 209 171 216 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	0.38	5.3e+03	-1.6	0.0	83	110	72	100	60	126	0.59
2	2	3.7e-12	5.2e-08	34.2	0.1	1	45	171	209	171	216	0.92

Coding Sequence: ATGCCAGTTGGCGCGCTGATCTGGCGAGTGCGTCGAGGCAACAGCATGAAGTTGACAGTGGCACCTCGAACACAGCGCAAGGTGGCACGGGCTGGGAGTAAGCGTCCGGCGCCTGGCAAGCGAATCATTCTACCAGCTGGCCCTCCGGAGTACCAGACCACTGATCCTTGTGACAGCTCCAATGACTCTGGCCTCGGGCTGGAGCATCATGTTGAGCTGCCGCGGCCGTCGGCTCGACTGTGGTGCACTGACGTCGGAGTGCCGGCCAAGCGCAAGAAGCTGGAGATCAAACAAGAGTCCGATGACGCCAACGATAACTTCACCTTCGAGGAGACGATCAACCAAGCGAAGAGGAGTCCGCTAGAAATGCAGCTGTTAATGCCAGTTCTGGAGCGCGTGTCGGCGCCTCGCCCGAGCGCTCACCGTGTGACGGTGCGACGACCAGCACTGACAGCTGTTCAGCGCCGAGTTGGACCTGCGCTGCAACTTCTCGCGGCAACGAAACCTCATCTGCAGATACTCAGTCAGCCTGAGCAACAGCATCGAGCAAGATATCAGACTGAGGGCAGCCGAGGGGCTGTCAAGGATAGGACAGGCAATGGCTTCCCTACTGTCAAGGTTAGCCACGCTTATTCTACATCTTGTTTCATGCAGAA
Protein Sequence: MPVGALIWRVRRGNSMKLTVAPRTQRKVARAGSKRPAPGKRIILPAGPPEYQTTDPCDSSNDSGLGLEHHVELPRPSARLWCTDVGVPAKRKKLEIKQESDDANDNFTFEETINQAKRSPLEMQLLMPVLERVSAPRPSAHRVTVRRPALTAVQRRVGPALQLLAATKPHLQILSQPEQQHRARYQTEGSRGAVKDRTGNGFPTVKVSHAYSTSCFMQ

Sequence clustering based on sequence similarity using MMseqs2