Lnig004980.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- -
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010000381.1:162508-171481[+]
Transcription Factor Domain
- TF Family
- CSL
- Domain
- BTD domain
- PFAM
- PF09270
- TF Group
- Beta-Scaffold Factors
- Description
- Members of this family of DNA binding domains adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and co-repressors (SMRT/N-Cor and CIR) [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00097 14 7.0 0.0 68 108 68 109 63 122 0.70 2 4 0.0015 21 6.4 0.0 68 108 130 170 124 183 0.72 3 4 0.0015 21 6.4 0.0 68 108 191 231 185 244 0.72 4 4 0.0013 18 6.6 0.0 68 108 252 292 246 308 0.71
Sequence Information
- Coding Sequence
- ATGTTGAATCAGGACGAGGCAGATGGAGGGATAATGGAGAGGAAGTGGAGGAGGAACAAGGAACAAGGAAGAAGGGCTGTGGGAATGAAAGACAACACAAGGGTGTCGCAGGAAGTGAAGGGTCAAGGGTCACGACAGAGAGCTCAAGATGTCAGGCGAGCTCATGGTCTTCTTCTGCTTGTACCTCGAGGTCCAGTGGTCTTGCTCTTGGCTCGTAATGACCCAGTGAGTCTTGTGCATGACTGCGCAATGATCTGGGTGGCAAGATCAATGCTGCTGGTAATTACACTGGTCCACGACAAGACCCAGCACACAACAACACACAGCTCAAGATGTCAGGCGAGCTCATGGTCTTCTTCTGCTTGTACCTCGAGGTCCAGTGGTCTTGTCTTGGCTCGTAATGACCCAGTGAGTCTTGTGCATGACTGCGCAATGATCTGGGTGGCAAGATCAATGCTGCTGGTAATTACACTGGTCCACGACAAGACCCAGCACACAACAACACACAGCTCAAGATGTCAGGCGAGCTCATGGTCTTCTTCTGCTTGTACCTCGAGGTCCAGTGGTCTTGTCTTGGCTCGTAATGACCCAGTGAGTCTTGTGCATGACTGCGCAATGATCTGGGTGGCAAGATCAATGCTGCTGGTAATTACACTGGTCCACGACAAGACCCAGCACACAACAACACACAGCTCAAGATGTCAGGCGAGCTCATGGTCTTCTTCTGCTTGTACCTCGAGGTCCAGTGGTCTTGTCTTGGCTCGTAATGACCCAGTGAGTCTTGTGCATGACTGCGCAATGATCTGGGTGGCAAGATCAATGCTGCTGGTAATTACACTGGTCCACGACAAGACCCAGCACACAACAACACACAGCTCAAGATGTCACGCACCACGCCGTGTTATTGTTGCGCCATGTGCGTGTGCAGGAGCATTGTCCTCGCAAGACAGTGTCGCCGTGACACCTGTTAGCTGCTACATGTCGTGTCTTCACGCCAAGTCGCTATGTACAGTTGTTCTGTTCGCAACCTCGCTAGGAATTCCGCGTGTCAAGTATAACAGCGTCGCACCGTTCTGCTAG
- Protein Sequence
- MLNQDEADGGIMERKWRRNKEQGRRAVGMKDNTRVSQEVKGQGSRQRAQDVRRAHGLLLLVPRGPVVLLLARNDPVSLVHDCAMIWVARSMLLVITLVHDKTQHTTTHSSRCQASSWSSSACTSRSSGLVLARNDPVSLVHDCAMIWVARSMLLVITLVHDKTQHTTTHSSRCQASSWSSSACTSRSSGLVLARNDPVSLVHDCAMIWVARSMLLVITLVHDKTQHTTTHSSRCQASSWSSSACTSRSSGLVLARNDPVSLVHDCAMIWVARSMLLVITLVHDKTQHTTTHSSRCHAPRRVIVAPCACAGALSSQDSVAVTPVSCYMSCLHAKSLCTVVLFATSLGIPRVKYNSVAPFC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -