Llat002560.1
Basic Information
- Insect
- Leucozona laternaria
- Gene Symbol
- Clic
- Assembly
- GCA_932273905.1
- Location
- CAKNZR010000042.1:222225-249487[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.5e-12 1.5e-09 38.7 0.1 4 44 181 222 179 223 0.93 2 3 5.2 5.1e+03 -1.4 0.0 23 37 247 261 242 265 0.75 3 3 1.7e-10 1.6e-07 32.2 0.1 5 39 292 326 289 331 0.92
Sequence Information
- Coding Sequence
- ATGTCCTTACTTAAACTTCTTTTGGATTTAGCAGAAAACTTGGACAACATGTCATCGCCATACTACGAAAGCGATTTTGGTTTAGGCCTCAATCCCCACTCCATTCAACTTAGTCCTCGTCCAAGGCTTTGGCAAACCGCATGGAAGATTATCCTGCTAAGATGCTTCGCTCTAAAGGAAGAAACGAAAATCATCGAAGTTTCTGAATTACAAGAAGATTCCGTGTCAGCTGAACAATTGGATGTACCGTGTCTGCCAGTAACGAGAGTTTACTCAGGAAATGACGAGTACATTATATACGAATTAAAAAGTGATACTCAACCGACGTTTAACTACGTCGTTACCAATCCGGAAGAACCACCGCCTGACTGCGTTAATCCAAATGAAGATACAATCACCAACAGCATCGTTGCCAGTGTTACCAAAGTAATAGCAAATCCGGTACCATTCACAATTAGTGTTGGAATACCAATTGAAAATGATCAAACAGATACTTGTAAGGAAAACTCGCCAAAAACAAAGCGTGCTTTAGCCCGAAAAAGACTCGCAGAAGCTGTTGCGGCTGTAGTCAATAAAGACATGACCATTGGTAAAGCTGCAAAAGCCTTTGAAGTGACCAAGAGTACCTTATGGAATGAAGTTAATAAACACACTAACCACAGAAAAAAGAAAGTCGACGAAGATCTCAATAAGAAGATCGTTGATCGTATTTGTGCAGGTGAATCACTGTCAGCAATTGCAAGATCCTTAAATGTGTCTAAATCCACAATACACCTACATAAAGTTCGACTAGCACAAGCTGGTCAGCTTCCACCGAGTGTAACCTTCAAACCGCCTATAGATAAAGAGGAACAACTTGCTATCAAGAATCGTATAATTCGTGCTTTCCGCGCCATTAGAGTAAATGGCATGTCGTTGCGTTTAGCATCATCGTTCTTCTCAGTGCCGAGGTCGACGCTGTGGAAACACATACGGCGGTTTAAAGCTTCTCAAAAGAAACAAGAAAAAGATGCCCAGCATAATGGCAACGATTCTGAAAATGCTATAAAAGATGAAGTCAATGAAAATAGTTCAGAGGAAACTTCTAGTGAAGAGGAAGATAGCACAGCAGATGAAAATCTCCATGAAGCAGTTTCTCAAGTAGATGAAAATACTTCCGATCTACAATCTACCACAACTGAAGGTGATAATCAAGATGGCTTGCATTTACTGAATGCTTATTGTGCGGAACACATAGATGATCGAAGTGAAGAGGGGGACTTTTTTATAAGTTTTGACTTTGAAACTTTTGAGGAGTATGCATCTACAATCGATGGAAGACGTAAAGGAGCTTGCCTTTTTTGCCAAGAATATTTCATGGATTTGTACCTGTTAGCCGAACTTAAAACGATAAGTTTAAAGGTCACAACAGTTGATATGCAAAAACCTCCACCAGATTTCCGTACCAATTTTGAGGCGACACACCCGCCAATACTTATTGACAATGGTCTGGCCATACTGGAAAATGACAAAATCGAAAGGCACATCATGAAGAACATCCCTGGTGGATACAATCTCTTCGTACAGGACAAAGAAGTAGCCACCCTGATTGAAAACCTGTATTCCAAATTGAAACTGATGTTGGTTAAAAAAGATGAAAACAAAAACAACGCCTTACTGTCACATTTGAAGAAGATCAATGACCATTTGGCATCACGTGGGACACGTTTTCTAACGGGTGATACTATGTGTTGTTTTGATTGTGAACTGATGCCAAGATTACAGCACATTCGAGTGGCTGGAAAGTATTTTGTCGATTTTGAAATACCCACTCATCTGTCATCCTTGTGGCGTTACATGTATCACATGTATCAATTAGATGCCTTCACGCAATCCTGTCCAGCCGATCAGGATATTATAAATCATTATAAACTACAACAGATGCTCAAAATGAAGAAACACGAGGAACTGGAGACACCAACATTCACAACGTCAATTCCGATTGATATTTCGGACTAA
- Protein Sequence
- MSLLKLLLDLAENLDNMSSPYYESDFGLGLNPHSIQLSPRPRLWQTAWKIILLRCFALKEETKIIEVSELQEDSVSAEQLDVPCLPVTRVYSGNDEYIIYELKSDTQPTFNYVVTNPEEPPPDCVNPNEDTITNSIVASVTKVIANPVPFTISVGIPIENDQTDTCKENSPKTKRALARKRLAEAVAAVVNKDMTIGKAAKAFEVTKSTLWNEVNKHTNHRKKKVDEDLNKKIVDRICAGESLSAIARSLNVSKSTIHLHKVRLAQAGQLPPSVTFKPPIDKEEQLAIKNRIIRAFRAIRVNGMSLRLASSFFSVPRSTLWKHIRRFKASQKKQEKDAQHNGNDSENAIKDEVNENSSEETSSEEEDSTADENLHEAVSQVDENTSDLQSTTTEGDNQDGLHLLNAYCAEHIDDRSEEGDFFISFDFETFEEYASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGLAILENDKIERHIMKNIPGGYNLFVQDKEVATLIENLYSKLKLMLVKKDENKNNALLSHLKKINDHLASRGTRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTHLSSLWRYMYHMYQLDAFTQSCPADQDIINHYKLQQMLKMKKHEELETPTFTTSIPIDISD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00664764;
- 90% Identity
- -
- 80% Identity
- -