Lobt049949.1
Basic Information
- Insect
- Leucophora obtusa
- Gene Symbol
- grau
- Assembly
- GCA_949987735.1
- Location
- OX465299.1:51786958-51800531[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.034 3.6 10.0 7.0 2 23 268 289 267 289 0.97 2 10 2e-05 0.0021 20.1 1.5 2 23 399 420 398 420 0.96 3 10 4.3e-06 0.00046 22.2 2.2 2 23 531 552 530 552 0.97 4 10 3e-06 0.00031 22.7 2.1 2 23 663 684 662 684 0.97 5 10 0.023 2.4 10.5 6.0 1 23 692 715 692 715 0.96 6 10 1.2e-05 0.0013 20.8 0.7 1 23 723 746 723 746 0.96 7 10 0.011 1.2 11.5 0.4 3 23 752 773 750 773 0.90 8 10 0.44 47 6.5 0.7 1 23 781 804 781 804 0.88 9 10 1.6e-05 0.0017 20.4 2.0 1 23 810 832 810 832 0.97 10 10 2.8e-05 0.003 19.7 0.5 1 23 838 861 838 861 0.98
Sequence Information
- Coding Sequence
- ATGGAAAGTTGTCTCTTATGTCTAGAGCTGAACAAGGAATCTGTGGATAGTATAAAAGTTAATTCAACACAATGGCAAGAGCTGAATATACataatttaatagaaaaatatttttggcCCATGCAAACAATACAGCAATCATCCTGGCTTTGTAATATGTGCTGGGCGGAATTACATGATTTTCATAAATTCTATATGCGTATAGAAGATGCTCATACCAATTTTGGTTTATTCGCAAAAATCGAAAATCCTAATATTAATTCTCAATATGAACcggaaatttttttacaagaaaGTCTAGCACCAGAATTAATTAAGCAAGAAGAGACAATTATTATAAAAGAAGAACATGATAAAGATTTATGGGATGACGATACACCTCTTATGCCAACAAATAAGCGTAAACGAACAGAAACTTCAAGTCCCGACATAACTCGTCATAAAtctaaaaaactaaaacaaaCACAAAAATCTAAAACCAAGAAAGAAGAACATAACAAAAATGTAGAAGCTCTTCAAACAACAGATTCCGATAATGAATCAGACAATTCTACAAGTAATAGAAATAATACAAACATAGGCAGAAATGTTAATTTGGAAAAAGATAAATTTCTTGCAGACAATTTTAAGTTGGAATGTGTTCTTTGCCAAACGCCTATGAAAACTTTTCAATTGTTATGTATACACTTTGAAAAGGAACATGATGGCGAGCCTGGTTATGTTATATGTTGTAACACCAAATTCTTTGAACGACGTCTTATACTCGATCATGTACATCAACATTTAGAtccaaattatttgaaatgcaaAGAATGCTGTAGAATATTTACAAATCGGAGATATTTAACGAAACATAGAAAGAAACATCAAATAGGAATTGATAAGCAATCCAAAATAGAAGAACCTCAAAATACCGATTCCGATAGTGACCCAGAAAATACTACTTCaaccaataaaataaaatcaattagAAGAAAAAATGTTAATCTGGAAAAAGATAAATTTcttgcagaaaattttaaactaGAATGCGTTATTTGTCAAATGCCAATGAAAACTTTTCAGCTACTATCCGCACACTTTGAAAGTGATCATGAAGGCCAAACGGGCTATGCTATGTGTTGTAACACCAAATTTTTCGAACGTCGATTTATATTAGATCATGTACATCAACACTTAGATCCAAACTATTTAAAATGTAAAGTATGCGATAAGGTATTTTCAAATCGTCGGTATTTAACGGTACATAACAGTACACATGAAACACCTACTGATAAACAACCACCCATAAAACAAACTCAAACTACCGATTCCGATAATGACCCAAATAGTGCAACTGCTTTGACTAATAGAAGTAAAACAAACATAGGCAAAAACATAAATCTGGATAAGGATGTATTTCTTGCAGAAAACTTTAAATTGGAATGCATTATTTGTCAAAAGCCTATGGAAACTTTTCAATTATTATGTACACACTTTGAAAAGGAACATGATGGAGAACCGGGCTATGTTATGTGTTGTAACATCAAATTCTTTGAACGTCGTCTTATATTAGATCATGTACATCAACATTTAGATCCAAACTACTTAAAATGCAAATTATGTGATAAAGTATTTACAAACCGTCGATATTTAACAGTACATTTGAAGAGACACGAAAAACCAACTAATAAACTATTACTCAAAAAACAACCTCAAACTTCAGATTCCGATAATGAACCAGATAATATAATTCCTTCAACTGATAAATCAAAATCaagaaaaagtaaaaatataaatctgGAAAAAGATAAATTTCTTGCAGAAAACTTTAAGTTGGAATGCGTGATTTGTCAAATGCCTATGGACAACTTTCAAGAATTATGCGCACATTTTGAAAAGGAACATAATGGGGAACCGGGTTATGTTATTTGTTGTAACATTAAATTCTTTGAACGTCGTCTTATTTTAGATCATGTACATCAGCATTTAGATCCCAACTATTTAAAATGTAAAGAATGTGGTAAAGTTTTCACAAATCGTCGATATTTAACCATACATAGCAGAAAACATGATCCAACACAGAACAGAAATTATTGTTGTGATATTTGTGGATTAAGTTACACTACTCCTCACAATTTAATATGCcataaacaaacaaaacatATATCGGACGAAGAAAAAATGTTTCCTTGTACACATTGTGGTAAAAGATTTGGCACCAAGTGGCTACTTAAGGAACACGTTAGAGCTGTCCATACATCTGCTATAAATTGTGATATTTGTGGTTTACGCTTGGTTAATAATTATGCATTAAGGAAACACAAATACAACAAGCATTCGGAGggtgaaaaaattaaatatacCTGCTCCATTTGCTCAAAAGTATCAACAAATATTTATGCCCATAGAAATCATGTAAGCATTGTACATCGAACGGGTTACAATCACAAATGTACAGTATGTGACAGGGCTTTTAAAAGAAGGCGATCATTAAAGGAACATCTTGCTATTCATACTGGTAAACCGTTATATACTTGTCCATGGTGTCCAAAAACATTTAATTCAATTTCCAATATTGCTAGTCATCGTAGAAGAAGACATCCCCAGGAAGAGGAGAATCGTAAACAAAATTCTGGAAACGTAAATGTTAAAATTGGCGattaa
- Protein Sequence
- MESCLLCLELNKESVDSIKVNSTQWQELNIHNLIEKYFWPMQTIQQSSWLCNMCWAELHDFHKFYMRIEDAHTNFGLFAKIENPNINSQYEPEIFLQESLAPELIKQEETIIIKEEHDKDLWDDDTPLMPTNKRKRTETSSPDITRHKSKKLKQTQKSKTKKEEHNKNVEALQTTDSDNESDNSTSNRNNTNIGRNVNLEKDKFLADNFKLECVLCQTPMKTFQLLCIHFEKEHDGEPGYVICCNTKFFERRLILDHVHQHLDPNYLKCKECCRIFTNRRYLTKHRKKHQIGIDKQSKIEEPQNTDSDSDPENTTSTNKIKSIRRKNVNLEKDKFLAENFKLECVICQMPMKTFQLLSAHFESDHEGQTGYAMCCNTKFFERRFILDHVHQHLDPNYLKCKVCDKVFSNRRYLTVHNSTHETPTDKQPPIKQTQTTDSDNDPNSATALTNRSKTNIGKNINLDKDVFLAENFKLECIICQKPMETFQLLCTHFEKEHDGEPGYVMCCNIKFFERRLILDHVHQHLDPNYLKCKLCDKVFTNRRYLTVHLKRHEKPTNKLLLKKQPQTSDSDNEPDNIIPSTDKSKSRKSKNINLEKDKFLAENFKLECVICQMPMDNFQELCAHFEKEHNGEPGYVICCNIKFFERRLILDHVHQHLDPNYLKCKECGKVFTNRRYLTIHSRKHDPTQNRNYCCDICGLSYTTPHNLICHKQTKHISDEEKMFPCTHCGKRFGTKWLLKEHVRAVHTSAINCDICGLRLVNNYALRKHKYNKHSEGEKIKYTCSICSKVSTNIYAHRNHVSIVHRTGYNHKCTVCDRAFKRRRSLKEHLAIHTGKPLYTCPWCPKTFNSISNIASHRRRRHPQEEENRKQNSGNVNVKIGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00717017;
- 90% Identity
- -
- 80% Identity
- -