Ehis041929.1
Basic Information
- Insect
- Eustalomyia histrio
- Gene Symbol
- grau
- Assembly
- GCA_949748255.1
- Location
- OX456527.1:67219536-67222531[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 9.2 9.7e+02 2.0 1.0 2 23 212 234 211 234 0.91 2 12 4.8e-05 0.0051 18.6 4.6 2 23 267 288 266 288 0.97 3 12 6 6.3e+02 2.6 1.1 2 23 344 366 343 366 0.91 4 12 4.1e-06 0.00043 22.0 5.2 1 23 399 421 399 421 0.99 5 12 5.1e-07 5.3e-05 24.9 1.6 2 23 526 547 525 547 0.97 6 12 4.6e-05 0.0048 18.7 2.4 2 23 658 679 657 679 0.97 7 12 0.018 1.9 10.5 6.0 1 23 687 710 687 710 0.96 8 12 1.1e-05 0.0012 20.6 0.6 1 23 718 741 718 741 0.96 9 12 0.0095 0.99 11.4 0.4 3 23 747 768 745 768 0.91 10 12 0.046 4.8 9.3 2.0 1 23 776 799 776 799 0.94 11 12 9.7e-06 0.001 20.8 2.0 1 23 805 827 805 827 0.97 12 12 2.2e-05 0.0023 19.7 0.5 1 23 833 856 833 856 0.98
Sequence Information
- Coding Sequence
- ATGGAAAGTTGTCTGTTATGTCTAGAGCTGAACAATGATTCTGCTGGCAGTATAAAAGTAAATTCAACACAATGGCAAAAGctgaatatacaaaatttaatagaaaaatatttttggcccaTGcaaacaatacAGCAGTCTTCCTGGCTTTGTAATACGTGCTGGGAGGAATTATATGATTTCCATAAATTCTATATACGTATAGAAGATGCTCATaccaattttagtttatttacaaaaatcgaaAATCCTAATAATAATTCTCAATATGAGccggaaatttttttacaagaaagtgTAGCAACAGAATTTATTAAACAAGAAGATTTTATTACTATAAAAGAAGAACATTGTAAAAGTTTATGGGACGATGATACACCTCTCATGCCGACAAATAAGCGTAAACAAACAGAAACTTTAAATCCAGATATAACGCGTCAAATATctaaaagactcaaaaaaacTAAGGCTACAAAATCAAAAGAAGAATCTAATGAAATTGTTAAACATCTTCAAATAACAGATTCCAATAATGAATCAGATAATAacactttaaataatataaataacacaaaaataggtaaaaatgttaatatcgaaaaagataaatttcTCGCAGATAATTTTAAACTGGAATGTGTTATTTGTCAAAAGCCTATGGAAACTTTTCAGCTATTATGTACACATTTTGAAAAAGAACATAAACAGCCTGGTTATGTCATATGCTGTGACATCAAATTTGTTGAACGACGACTTATACTAGATCATGTACATCAGCATTTAGATCCCaactatttaaaatgtaaagacTGCTTTAGGGTATTTTCAAACCGTCgatatttaacaaaacataGGAAGAAACATCAAATACCAACTGATAAACAATCATCACCCAAAGACCAACCCCAATCTACCGATTCCGAGAGTGATCAAGATAATATAAGCACTTCAActactaaaataaaatcaaacaaaagtaaaaacattaatctggaaaaagataaatttctagcagaaaattttaaattggaatGCACGATTTGTCAAATGCCAATGAAAACTTTTCAACTATTATGTGTACACTTTGAAAAAGAACATGAAGGACAACCGGGCTATGTGATGTGTTGTGACATCAAATTCTTCGAACGTCGATATATATTAGATCATATACATACACACTTAGAtccaaactattttaaatgtaaagcaTGCCATAAGGTATTTACGAATCGTCGAAATTTAACGACACATATCAAGACACATGAATTAGCCACAGAACAATCACAAAATACAAATTCCGATAATGGCCCAGATAGTTCAACAGCTTTAACaagtaaaagtaaaacaaacatAGGCAAAAACATAAATCTGGATAAAGATGTATTTCTTGCAGAAAACTTTAAACTGGAATGCATTATATGTCAAAAGCCTATGGAAACTTTTCAACAGCTATGCGCTCATTTCGAAAAAGAACATGATGGCGAACCGGGCTATGCTATGTGTTGTAACATCAAATTCTTTGAACGTCGTCTTATATTAGATCATGTACATCAACATTTAGATCCAAACtacttaaaatgtaaaatatgtgaTAAAGTATTTACAAATCGTCGATATTTAACAGTACATATAAAGAGACATGGAAAATCAACTGACAAACTTTTACCCAAAAAACAGCCTCAAACTTCAGATTCCGATAATGAACCAGATAATACAGCAACTGCAACTGATagatcaaaatcaaaaaaaagcaaaaatataaatctggAAAAAGATAAGTTTCTTGCAGAAAACTTTAAATTGGAATGCGTTATTTGTCAAACGCCTATGGACAATTTTCAAGAATTATGTGCACACTTTGAAAAGGAACATAATGGAAAACCGGGTTATGTTATATGTtgtaacattaaattttttgaacgtCGCCTTATTTTAGACCATGTGCATCAACATTTAGATCCCaactatttaaaatgtaaagaatgTGGTAAATTATTCACAAATCGTCGATATTTAACCATTCACAGCAGAAAACATGATCCaacacaaaacagaaattattgtTGTGATATCTGTGGTTTAAGTTATACTACTCCTCACAATTTAATTTgtcacaaacaaacaaaacatataTCGGACgaagaaaaaatgtttccatgTACACATTGTGGTAAAAGaTTTGGCACCAAGTGGCTGCTTACAGAACATGTTAGAGCTGTCCATACATCTGCTGTAAATTGTGATATTTGTGGTTTACGTTTGGTAAATAATTATGCTTTAAGAAAACACAAATACAACAAACACTCTGAGGgtgaaaaaatcaaatacacCTGCTCCATTTGCTCAAAAGTATCAACGAATAAATATTCCCACAGAAATCATGTAAGCATTGTACATCGAACGGGCTACAATCACAAATGTAATGTATGTGATAGGGCTTTTAAAAGAAGACGATCATTAAAGgAACATCTTGCTATTCATACTGGTAAACCTTTATATACTTGTCCATGGTGtccaaaaacatttaattcaaTTTCCAATATTGCTAGTCATCGTAGAAGACGGCATCCCGAAGAAGAGGAGAACCGTAAGCAAAATTCTGGAaatgtaaatgttaaaattggtGATTGA
- Protein Sequence
- MESCLLCLELNNDSAGSIKVNSTQWQKLNIQNLIEKYFWPMQTIQQSSWLCNTCWEELYDFHKFYIRIEDAHTNFSLFTKIENPNNNSQYEPEIFLQESVATEFIKQEDFITIKEEHCKSLWDDDTPLMPTNKRKQTETLNPDITRQISKRLKKTKATKSKEESNEIVKHLQITDSNNESDNNTLNNINNTKIGKNVNIEKDKFLADNFKLECVICQKPMETFQLLCTHFEKEHKQPGYVICCDIKFVERRLILDHVHQHLDPNYLKCKDCFRVFSNRRYLTKHRKKHQIPTDKQSSPKDQPQSTDSESDQDNISTSTTKIKSNKSKNINLEKDKFLAENFKLECTICQMPMKTFQLLCVHFEKEHEGQPGYVMCCDIKFFERRYILDHIHTHLDPNYFKCKACHKVFTNRRNLTTHIKTHELATEQSQNTNSDNGPDSSTALTSKSKTNIGKNINLDKDVFLAENFKLECIICQKPMETFQQLCAHFEKEHDGEPGYAMCCNIKFFERRLILDHVHQHLDPNYLKCKICDKVFTNRRYLTVHIKRHGKSTDKLLPKKQPQTSDSDNEPDNTATATDRSKSKKSKNINLEKDKFLAENFKLECVICQTPMDNFQELCAHFEKEHNGKPGYVICCNIKFFERRLILDHVHQHLDPNYLKCKECGKLFTNRRYLTIHSRKHDPTQNRNYCCDICGLSYTTPHNLICHKQTKHISDEEKMFPCTHCGKRFGTKWLLTEHVRAVHTSAVNCDICGLRLVNNYALRKHKYNKHSEGEKIKYTCSICSKVSTNKYSHRNHVSIVHRTGYNHKCNVCDRAFKRRRSLKEHLAIHTGKPLYTCPWCPKTFNSISNIASHRRRRHPEEEENRKQNSGNVNVKIGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00893123;
- 90% Identity
- -
- 80% Identity
- -