Basic Information

Insect: Leucophora obtusa
Gene Symbol: -
Assembly: GCA_949987735.1
Location: OX465299.1:51971442-51975352[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.4 42 6.6 2.5 2 23 272 294 271 294 0.92

2 10 1.8 1.9e+02 4.6 0.7 6 23 303 320 303 320 0.97

3 10 0.00084 0.089 15.0 4.5 1 23 326 349 326 349 0.98

4 10 0.00023 0.024 16.8 0.6 1 23 359 382 359 382 0.96

5 10 1.2e-05 0.0013 20.8 2.2 2 23 391 413 391 413 0.97

6 10 0.00043 0.045 16.0 0.3 3 23 421 441 420 441 0.97

7 10 3e-05 0.0032 19.6 0.2 3 23 451 472 449 472 0.95

8 10 2.5e-05 0.0027 19.8 1.3 1 23 479 502 479 502 0.97

9 10 1.3e-06 0.00014 23.9 0.9 2 23 509 530 508 530 0.97

10 10 0.00035 0.037 16.2 1.6 1 23 536 559 536 559 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.4	42	6.6	2.5	2	23	272	294	271	294	0.92
2	10	1.8	1.9e+02	4.6	0.7	6	23	303	320	303	320	0.97
3	10	0.00084	0.089	15.0	4.5	1	23	326	349	326	349	0.98
4	10	0.00023	0.024	16.8	0.6	1	23	359	382	359	382	0.96
5	10	1.2e-05	0.0013	20.8	2.2	2	23	391	413	391	413	0.97
6	10	0.00043	0.045	16.0	0.3	3	23	421	441	420	441	0.97
7	10	3e-05	0.0032	19.6	0.2	3	23	451	472	449	472	0.95
8	10	2.5e-05	0.0027	19.8	1.3	1	23	479	502	479	502	0.97
9	10	1.3e-06	0.00014	23.9	0.9	2	23	509	530	508	530	0.97
10	10	0.00035	0.037	16.2	1.6	1	23	536	559	536	559	0.95

Sequence Information

Coding Sequence: ATGGATGGATGCTTGTTGTGTTTAGAGATAAATAAGAAATTTGAGGATTGCATTAAAGTCGACTCTTTGCAATGGCTGGAATTAAATGTTCAATCTATAATAGAAAAACATTTTTGGTGCATTGAAATCTTAAACGGATACTCCAGTTTGTGCACAACATGCTGGCAAGAATTAAatgattttcataaattttataaacGCATAGAAGTGGCACATATAAATGATGGTAAATTCATGAAAGTTGAAGATGAAACTGAAGTGTTAATGGATGAAAAAGATTATAATTTTATTAAGGAACTAGATAATAATCCGCAGAAATGCAAAGAATTGTTTGATACAATTCTCACGAATAATCAAAACCTTGAACCAGAGGTTTTAATAATTAAAGAAGAAAATCCTTTGGATGATATGGTAATAGAGGAAGATAATGACGATAAACCATTAAGACAAAGGCGaaaacatgaaaaaaataataaggAAGATCCTTTAAAGAAATCAAAAACGtttaaaagtaaaattaaaaaaactagAAAGCAATTAAAAGAATTGGTCAATGAACATATTACACATataaaatcagcaacaaataAAGAAGTCGATAAAGtatttccaattaaaaatgAATTGTTCGAAATATCAAAAGATGAAGACATCGCAACAAATGACAACGAAGCAACTAACTCAAATGATGACAACAATGAAGATGAAACTAATTCACAATATGATCAAGAAGAATCTAATGAAAACTGTACTAAAAAATCCAAGACAAGTTGTAGCAAAAATGATAAATTTATATCTGAAAATATTCAATTATATTGCCATCTATGCCAGATACAATTCGAAAACTTTTCTCCTCTACTTAAACATTTCCATGTCGAACATAAACAACGTGGCTATGCCGTGTGTTGTCAGAGAAAATTCATGCATCGTTCAGATATAATGGATCACATATATGTCCATAGGAATCCAGAACATTTCAAATGtaaattttgtggaaaaattttGGCTGATCGTCATTGTTTAAGGGTACATATAAAAAAGTTGCACGAAGGTAAAAACAACACCCAAACAAATTTTGATTGTGAGATTTGTGGAAAAATGTTAGCCAACAAACATGGATTACAAGTTCACACATATACAATGCATGAGGTGACCAAAGATGACAGAGAAACCTGTACAGAGTGCAATAGAACCTTTCGCAATAAATTGTCTTTAAAAAGTCACATAAAAACTGTACatttaaagaaatatgttaaAATATGTGATCTTTGCGGTATTACTATATCGGATAAGGAACTATTTAAACGTCACATGTTAAAACATGAAGGCAAACCATTGCCCACAATAGCCTGCAATATTTGCGGACGCATTTATACGGAGAAAAAAAGTTTAAGACGTCATATAAATTTAGCACATCCAAAAGAAAAAGTTGAATTTAGCTGTAATTTATGTACGAAAAAATTTGCCAGCCAAGATAATGTGAAAAAGCACGTAAAAAGTGTACATGAATCAAGTTATGTGCAAAAATGTACCGTATGCGAGAAGACTTTTAGGAGACCAGATGCATTAAGGGATCATATGTCTAGACATTCTGGAACTCCCTTACATTCATGCCCTTGGTGTCCTAAGGTATTTTACTCAAATGGTCAAATGCATGCTCACCGCAAAGAGCTTCATCCTAAGGAATGGGAGGAATACATACGTGAAAAACATTCCGGAAATTTGCCAGAAAAATATAAACTACCTGCTGCAATGCAAATAAACAATTTTGCATTAACACTTTAA
Protein Sequence: MDGCLLCLEINKKFEDCIKVDSLQWLELNVQSIIEKHFWCIEILNGYSSLCTTCWQELNDFHKFYKRIEVAHINDGKFMKVEDETEVLMDEKDYNFIKELDNNPQKCKELFDTILTNNQNLEPEVLIIKEENPLDDMVIEEDNDDKPLRQRRKHEKNNKEDPLKKSKTFKSKIKKTRKQLKELVNEHITHIKSATNKEVDKVFPIKNELFEISKDEDIATNDNEATNSNDDNNEDETNSQYDQEESNENCTKKSKTSCSKNDKFISENIQLYCHLCQIQFENFSPLLKHFHVEHKQRGYAVCCQRKFMHRSDIMDHIYVHRNPEHFKCKFCGKILADRHCLRVHIKKLHEGKNNTQTNFDCEICGKMLANKHGLQVHTYTMHEVTKDDRETCTECNRTFRNKLSLKSHIKTVHLKKYVKICDLCGITISDKELFKRHMLKHEGKPLPTIACNICGRIYTEKKSLRRHINLAHPKEKVEFSCNLCTKKFASQDNVKKHVKSVHESSYVQKCTVCEKTFRRPDALRDHMSRHSGTPLHSCPWCPKVFYSNGQMHAHRKELHPKEWEEYIREKHSGNLPEKYKLPAAMQINNFALTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00716975; iTF_00893077; iTF_00892938;
90% Identity: -
80% Identity: -