Lobt029487.1
Basic Information
- Insect
- Leucophora obtusa
- Gene Symbol
- zfy1
- Assembly
- GCA_949987735.1
- Location
- OX465297.1:8057070-8064740[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 7.7e-05 0.0081 18.3 3.9 2 23 206 227 205 227 0.96 2 12 0.00018 0.019 17.2 1.4 1 23 233 256 233 256 0.97 3 12 0.0002 0.021 17.0 0.4 1 23 269 291 269 291 0.95 4 12 0.00043 0.046 15.9 1.4 1 23 296 319 296 319 0.98 5 12 3.5e-06 0.00038 22.5 2.2 1 23 325 347 325 347 0.98 6 12 1.6e-06 0.00017 23.5 1.2 1 23 353 375 353 375 0.98 7 12 0.28 29 7.1 0.5 1 23 381 403 381 403 0.94 8 12 1.6e-06 0.00016 23.6 0.9 2 23 409 430 408 430 0.98 9 12 3.1e-05 0.0033 19.5 2.1 1 23 436 458 436 458 0.96 10 12 0.00067 0.071 15.3 4.7 1 23 464 486 464 486 0.98 11 12 3.1e-06 0.00033 22.7 0.6 1 23 492 514 492 514 0.98 12 12 0.0016 0.17 14.1 0.3 1 23 520 542 520 542 0.96
Sequence Information
- Coding Sequence
- ATGGCTAAAATGTTGTTGGGTCGTATATGCCGTACATGTTTAGAAAAATCTGCAGAAATGCATAAACTACGGGAATTTATTGAAGATGATTTGCAAATTGAAGATATGCTTAATCAAGCTATACCCGACTTTGATCTGGAACTTGAGGATACACCACTACCAGTAGAAATATGTGAAGATTGTTTGGAGAAGTTACGTGTATCGTATAATTTTCATAAGAAATGTATGGAAACAAATCAACAACTAAGAGATATGTTGGTCAGAAATGAAGATGAGGATGAGATGCCAGCGGAACTAAATGACATCTTACAGGAAGACGATATTTTAATGGATAATCTCAAAAAAGAACCTATAGATGATGCATCAAACGGAAGCAATAATTTTACTCATGCTCCAATGACAGAGTTTGCCGATGTTTTAAGTCCAAGTTTCCAAATAGATCCGGTGAAGCTTGAAATTGCTATGGATGATGAAAAGATTGGTTTGGATAGTGACGATGGCAATAGTTCGGATGATTATTGGCCTAATGATGATAAGGAAGATAGTGAAAGcaatttattTGAAACTGCCGATATTAAACCTAAAAGAAAATATCGTAAAAAAGCCATTACTAAAATGTGTACTGAGTGCAATAAATCATATACGAATAATCTGCATTTCACACGTCATATGTCGGTACATTCAATGGAAAATGAATTTGTGTGCAATATATGTCAATACCGTTATATCAATGATACAGAATTGAAAAAACACATAAAACGCAAACATGTGGTTAGTAAAACTATAACTATTGCTGATGGTCCACATCCTTGTCCCGATTGTCCTATGATATTTGAACAAAAAAAGTCGTTGGTAAAGCATAAAGTAATGCATATGGAAAGAGATTTTAAATGTAAAGTTTGTGGTGTAAATTGTAAAGTAATGGCAGCGCTAACCAGACATATGAATAGTAAACATCCTGATGTTTTGCCATACAAATGTCATAAATGTGATAAAGCTTTTCCAGTAGAATCTCATTTAAATGATCATATCAATGAGCATTTGGGACAGAAAAAACATAAGTGCGAAATGTGTGAAAAAAGTTTTTCTTCACCTGGCTTTTTAGAGAGTCACATACGTATGCATACTGGAGAAACACCATTTTTATGTTTCCATTGCGGTGCAGGATTTAAAGCGGGGAATGTTTTGCGGCAGCATTTACAAATACATGGCGAAAAAAAAGTTCAGTGTCCGCAGTGTCCCAAGAAATTTTATTCCCAAAGCGTTCTAACCAAACATATGAAATCACATGCACCAGTTAAACGTCATGTTTGTGATGTATGTGGTGCGAGTTTCACAAGAAAGAGCACCCTTAATGATCATAAATTCAAACATACAGGACTAAGACCATTCACATGTGAAGAATGTAATTTGAGttttgtttttaaacgCCATTTCAAAAAACATAAACTCGTCCATACTGGTGAAAAGCCTCACCAGTGTACATATTGTGATCGTGCCTATGCTTCTAGCGGAGATTTGGTTAAACATTTACGTATCCATGTGGGTGAGAAAACCTATTTTTGTGACGAATGCCCAGAAgcttttaaatatttgaatggTTTAAATGAACATAAAAATCAACATTATAGAGAAAATATGGCATTACAACAAAATAAAGAGATCGATGTTGTGAAACCACAAAAAAGTGATAATAATGTTAAATAA
- Protein Sequence
- MAKMLLGRICRTCLEKSAEMHKLREFIEDDLQIEDMLNQAIPDFDLELEDTPLPVEICEDCLEKLRVSYNFHKKCMETNQQLRDMLVRNEDEDEMPAELNDILQEDDILMDNLKKEPIDDASNGSNNFTHAPMTEFADVLSPSFQIDPVKLEIAMDDEKIGLDSDDGNSSDDYWPNDDKEDSESNLFETADIKPKRKYRKKAITKMCTECNKSYTNNLHFTRHMSVHSMENEFVCNICQYRYINDTELKKHIKRKHVVSKTITIADGPHPCPDCPMIFEQKKSLVKHKVMHMERDFKCKVCGVNCKVMAALTRHMNSKHPDVLPYKCHKCDKAFPVESHLNDHINEHLGQKKHKCEMCEKSFSSPGFLESHIRMHTGETPFLCFHCGAGFKAGNVLRQHLQIHGEKKVQCPQCPKKFYSQSVLTKHMKSHAPVKRHVCDVCGASFTRKSTLNDHKFKHTGLRPFTCEECNLSFVFKRHFKKHKLVHTGEKPHQCTYCDRAYASSGDLVKHLRIHVGEKTYFCDECPEAFKYLNGLNEHKNQHYRENMALQQNKEIDVVKPQKSDNNVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00716944;
- 90% Identity
- -
- 80% Identity
- -