Lobt018371.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leucophora obtusa
Gene Symbol
-
Assembly
GCA_949987735.1
Location
OX465295.1:368100906-368116720[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.21 22 7.5 1.3 1 23 340 363 340 363 0.91
2 25 0.00035 0.037 16.2 1.1 1 23 369 392 369 392 0.97
3 25 0.0012 0.13 14.5 0.9 2 23 423 444 422 444 0.96
4 25 0.0029 0.31 13.3 3.9 1 23 520 543 520 543 0.96
5 25 0.067 7.1 9.0 2.1 2 23 551 572 550 572 0.97
6 25 0.0089 0.94 11.8 3.2 2 21 618 637 617 639 0.93
7 25 0.029 3.1 10.2 1.2 2 20 652 670 651 673 0.94
8 25 0.0061 0.64 12.3 2.4 1 23 750 773 750 773 0.96
9 25 0.00075 0.08 15.2 0.4 1 20 780 799 780 801 0.95
10 25 0.18 19 7.7 0.3 2 23 813 835 812 835 0.94
11 25 0.00065 0.069 15.4 0.4 2 23 850 871 849 871 0.97
12 25 1.3e-06 0.00013 23.9 1.4 1 23 877 899 877 899 0.98
13 25 1.1 1.1e+02 5.2 3.5 1 23 1054 1078 1054 1078 0.96
14 25 3.7 3.9e+02 3.5 1.9 1 23 1115 1138 1115 1138 0.89
15 25 6.2e-05 0.0066 18.6 2.8 1 23 1152 1175 1152 1175 0.96
16 25 0.0017 0.18 14.0 3.5 1 23 1182 1204 1182 1204 0.97
17 25 0.0056 0.59 12.4 0.1 2 20 1231 1249 1230 1250 0.94
18 25 0.0023 0.24 13.7 4.0 1 23 1309 1332 1309 1332 0.98
19 25 0.17 18 7.8 0.4 1 23 1369 1392 1369 1392 0.97
20 25 0.18 19 7.7 6.1 1 23 1425 1448 1425 1448 0.97
21 25 1.1e-06 0.00012 24.1 0.8 2 23 1478 1499 1477 1499 0.95
22 25 4e-06 0.00042 22.3 1.2 1 23 1505 1527 1505 1527 0.99
23 25 3.8e-06 0.0004 22.4 2.9 1 23 1533 1555 1533 1555 0.99
24 25 1.9e-06 0.0002 23.4 1.6 1 23 1561 1583 1561 1583 0.99
25 25 0.18 19 7.7 0.7 1 22 1589 1610 1589 1613 0.88

Sequence Information

Coding Sequence
aTGGACGGAGTGAAAAATTGCCTTATTAATGGAGTGGAATATAAATGTCGTACCTGTTTCGATCCAGGTAGTAATGTTTATTCTCTAACCAGTGAGTCAGGCAGAACAAAATCATGGCGAGATTTGTTAATAGAAATAGTTAAATTACAGACTTCTGATGATGACTTATTGCCAAATACTATGTGCTGCAAATGTTCTGTAATTCTCCAAGGTGCCCATGATTTTATAGAGCAGGCTCATAGTGTAAACAATAAATATTTGCAATTATTAAAAAGTTGCCCTAATCCTCTTCAAGAATGTCGATCAATGGAACCTGATTTATTTTCTGATTGTTTAGAGGAATCTGCCATTGATATACCACTAGATCAATATATTCCCGAAATAAAATTGGAAGAGGATATTGTTGATCAGTATAATATTGTATTGTTAGACAAACTTGCAGAGCATGATAGTAATGGAACCAAGCTGGAGAATGAAAATGAAGGTGTCAAAACTCATGCTGCAGGAGAATGTTCTGTTAAACGGGGAGGAAATATCCAACCAACTTGTGCTAATTGCAAACAAGTTGGTCATATAGCTAACTTTAGAGATTGTCCAGAGTATAAGGCTTATTTGGACAAAAGAGCTGCGCTTATGCGTTCATCAAAGGAACAAAGAACTAGAGCAGTAAATAATGTTAATTTGATTATGAATAGAACTAATCATATAACTACAAATAGATTTTACACAAGCGAACCTGATTCCTTATTTTTGAAAGATTGTATACGAGAATCCATCAAAACTGATGAAAAGAAACAACCTCTTACTAGAACGCAATTTACAGAAGAACACATTCTGGATGAAAACGCTTTCAATGATCATCATAATATTGATGGCAGCTCTTCATCTTCCAATGAAAGTGATTATCTGCCACTTAAGCGGATTAAGAAGGAAATCAATAGCAAAACTCCAGTTAAACGTAAAATCGGTCGTCCAGCTCCAGACTATTATGATCAAATACAAAAAGTCAATGATCGTTTTGTTTGTCTAATATGTCAGAAAACATTTTCGCTGCGTAAAGACTGTGGCCGCCATATAGCCTCCATACATTTAAGACAAACGAAGTATCCCTGCGAATTTTGTGGACAAAATTATAGTCGTAAGGACAAAGTGAGACAACACATTAAACGCATGCATTCCGATAGACCAGTCTATCCAAAAACAAAACGCAAAGAATGGGTATTTGGAGATCGTCTTTATAGTATACCAACAGCCTGGCAGCTGGTAGAATGTAAATTATGTAATACAAAATTTAGCACCACCAAAGACTTAAGAATACATTTAGAAAATCACGCCAATAGCGAAACATTAAGTCATTTACAATTGACCAGTGAAATTGTGCAACATTTGTTTACAAACCTACTTGATATTGACATTATTAAGGAAAGTATATGCAAAGATATTATAGAGCAACATtggtttaaatattatgcaGTATTAAATGAATATTCCTATGAAATGTCTATTAGTGACACAGAAGAGGAAGATTTGGCAAACGAACGTGAAGACTGTTTAAAATACAAATGTGAGTTGTGTGAAAGAACATTTTCGTTTAAACATCAGATGTTTTCTCATTTAAAAGAAGTCCATAAAAATGAAGAAGTCTCCTTAAAATGTGGTCTTTGTAAATTAGAATTTATATCGTCCCACATGTATGAAAAACATTCCCAAACACATTGTCgtaataaaaataaagtattgCTTTGTACACGATGTCCGGCAAAATTTGTTTGGCCAGAAAATATGAAAAATCACAATTGTGCCACAAAAGTAGTGGAAACTTCATCAACCCATGCCGCAAAGGAGTCTTTAAAATGTAATATTTGTGAACGTTCTTTTGAGGtcaaaactaaattacaaaagcaTTTGAATTGTCATAGTGAGGGTGGTAAAACTGCTACGAAAACCATTATACGTTGTGGTCTTTGTTCACAGTCATTTGAAAAACTCAAGCATTTACGTACACATATGCCCCTGCATTCCGATGGCAAGACTGgtatagatttaaaaaatagtaTTTACTTTAAAAGATTTGAAAGATCAAAAACCCCTGATCATACTCTACTGCAGCAAGAGATACAAAATGCCTTCAAGAAATCGCAAATCAGTAGATTCTATAGAGCTATTGATAAAGAAGGCAATGAAATGGATATTATGGATTCAGATAGTGAAACGGATGATGCCTGTAATGTTGAAGTGAAACCCGAATACAAATGTGAGCTTTGTCATGGCGGCTTTAAACGGCGGAAATTGTTACTGCAGCACCAAAATGAACAGCATAATGAGGTACCTCTGCCATTTACGTGTAATGACTGTACGAAACAATATGTGAGTAAAGACTTATTACAACAGCATTTAGTAAGAGATTGTTGGAATGAACATCGTCGAATAGCTCAACAATGTGAATATTGTAATGCCCGTTTTATATGGTCGAATAATTTAGTTAAACATAAGGAAATACAGCATAAGCATCAAAAACAACCAAGACCACAACGAGCTAGCACCTTGAAGTGTGAATATTGTGAAAAAGTGTTCATCTGGCCCAAAGATTTGGTACGTCATCGCAAAACTCACACCGAGGGTAAAAAGTTCTCGTGTCCGCATTGTGAACGTAAATTTCAACGTAAAGATAATCTTATCGCCCACATACGTATCCACGATCCTGACGGCACTCCAACAGTATCTAATTCAAGCAAAACGCTAGATTACATACTGCCACATTTAATAAAACCTCATGGTTGTAAACGTATCAGATGTATGATCTGCTATTCGGAGCACAACCGTATACGTGATTTACGGTCACATTTGCGATCTCATCGTTACTCAATTGATTTTGAGAAACGTAAAGAAACTGAACTATTTGACTACATATCAAAGCAACTATATTCCGAAGATCCTGCCATGACTGAAGAGGAGTTAGTAAAACGCATTGCTCTAGATATTGCCGCTGAAGTTAATTTAGAACGTTTTTATTCTATTACCAATGAAAATGGATATGAAGTTAGTTTGGATAGTTCCGAAACAGAAAGCGATTCCGATGATAATGATGCTGAGGTAGACAGTGATTGTAATGTGAATGAAAACCTAGTTAAAGCTAAATTAGATAAACCTAAACGTATTTATAAATGCGACATGTGTCCTCAACTCGGTTTTAATCGTAAATATAAACTTTATGATCATCATCAAAAGACTCATACTTGGGAAGAAGCTCGTCATATTTGTATACATTGTAATGGACGTTTTCTGTCGTCATACATGTTGCAATTGCATTATAAGAAACATTgtaaaaattcgaaaaaacgGCACTTTTGTCGCCGTTGTCCTCTAAGATTCATGTGGAAAAGTAATCTTAAGGCTCATTTTGTAATGGATCATGCCCATGAGGTTGCCAAAGAGGTCGAAGTTAATAGGTGCTTTGAATGTTTTCTATGTCAAAGAAAATTCTCTCAACAACGAGATCTAACACGTCATATGACATCAAATCATTCGGCCGATTCCGAAATTCATTATTGTTTACTATGTCCTAAAACGTTTTACGGCAATGACCACTTAAATGATCATTTAAATCGACATCGTTTAACAATGGACGATATTAATAGTGTGGAAAGCATTATACATTCTACTTGTTGGCCGAATggtgaaaaaattatcagatGCAAAATATGTGGTTTGGAATTTTCGAGTATGAAAAATTTATCAGAACACCTTTCACCCAGTAATCCACAAAATTTGTGCGCTGTTCAACATTCCCTAGCAAATTATTCAATAACAAATCACAAAGGATTCGAATTACATTTGGAACTAGATTCAGATACGGACACCGAAGATATGGGGCATAGTAATGAGGACGATGCGCCTGACCAACATAAGGATAAATATTATCCATACACCTGCTCATTGTGTAACGTGTCATGTAAACGAAAATATCAAATGGCTCAACATCAACGTTCGATGCATAATTATGAAGGACTTGTATTAAAGTGTGAAAATTGCACTTTTAGGACCGTATGCCAGaaaattttagaTTACCATAAAACGACTCAATGTTTTAACACCGAAAAACAGTATCAATGTGTCCGCTGTAAATTTAAGTTTATGTGGCAAGAAAATCTTGAAAATCATATCGCCATGCTACATCCGCCTAAAGATAATTGCAAAGCGCAAGATGAAGAACCAGCCGACTCGAAACCATTAGACAAGCTTGTGTCTTCGAATAAAAATGATCCCAATATATTCGAATGTATGGACTGCCATCGTCGTTATAATCGTAGAGATCGTTACAAGGCTCATTTTAAGAAATTTCACAACAACGATACGGCAGAACCCTCCGGCGAGAACCCATCAAACTCTAAAGTTCGCAAACAAGCTATACCAAAGAAAGACAAGAACTTTTTATGTGCTTTTTGTGGTCTTTCATTTTCCAATAATTCAAATCTTACTGTTCATATGAGGCGTCATACAGGAGAAAAACCATTTAAATGTGATCTCTGCGATATGGCTTTTCCACGCTCATCGGATTTACATGCTCATCGTCGCACTCATACCGGTGAAAGGCCATACAAGTGCATGTATTGTGAAAAATCTTTTTCGCGTCAATATAAATTAAATGTCCATACACGCATTCATACGGGTGAACGTCCGTATCAGTGTACATATTGTGAGAAAAGTTTTATTCAATCGAATGATTTAACACTGCATCTTCGTCGTCATACTGGTGAGAGACCATATTTGTGTGACATTTGCGGAGAAGGCTTTATATGTGCCACCTCCTTAAAACAACATCGTAACTCGAAGGGTCATTTGGAAAATAATGCACAAATAGAAGAGCGTTTACCAAATTCAGCACATTTCGAAATGCATTTTTAA
Protein Sequence
MDGVKNCLINGVEYKCRTCFDPGSNVYSLTSESGRTKSWRDLLIEIVKLQTSDDDLLPNTMCCKCSVILQGAHDFIEQAHSVNNKYLQLLKSCPNPLQECRSMEPDLFSDCLEESAIDIPLDQYIPEIKLEEDIVDQYNIVLLDKLAEHDSNGTKLENENEGVKTHAAGECSVKRGGNIQPTCANCKQVGHIANFRDCPEYKAYLDKRAALMRSSKEQRTRAVNNVNLIMNRTNHITTNRFYTSEPDSLFLKDCIRESIKTDEKKQPLTRTQFTEEHILDENAFNDHHNIDGSSSSSNESDYLPLKRIKKEINSKTPVKRKIGRPAPDYYDQIQKVNDRFVCLICQKTFSLRKDCGRHIASIHLRQTKYPCEFCGQNYSRKDKVRQHIKRMHSDRPVYPKTKRKEWVFGDRLYSIPTAWQLVECKLCNTKFSTTKDLRIHLENHANSETLSHLQLTSEIVQHLFTNLLDIDIIKESICKDIIEQHWFKYYAVLNEYSYEMSISDTEEEDLANEREDCLKYKCELCERTFSFKHQMFSHLKEVHKNEEVSLKCGLCKLEFISSHMYEKHSQTHCRNKNKVLLCTRCPAKFVWPENMKNHNCATKVVETSSTHAAKESLKCNICERSFEVKTKLQKHLNCHSEGGKTATKTIIRCGLCSQSFEKLKHLRTHMPLHSDGKTGIDLKNSIYFKRFERSKTPDHTLLQQEIQNAFKKSQISRFYRAIDKEGNEMDIMDSDSETDDACNVEVKPEYKCELCHGGFKRRKLLLQHQNEQHNEVPLPFTCNDCTKQYVSKDLLQQHLVRDCWNEHRRIAQQCEYCNARFIWSNNLVKHKEIQHKHQKQPRPQRASTLKCEYCEKVFIWPKDLVRHRKTHTEGKKFSCPHCERKFQRKDNLIAHIRIHDPDGTPTVSNSSKTLDYILPHLIKPHGCKRIRCMICYSEHNRIRDLRSHLRSHRYSIDFEKRKETELFDYISKQLYSEDPAMTEEELVKRIALDIAAEVNLERFYSITNENGYEVSLDSSETESDSDDNDAEVDSDCNVNENLVKAKLDKPKRIYKCDMCPQLGFNRKYKLYDHHQKTHTWEEARHICIHCNGRFLSSYMLQLHYKKHCKNSKKRHFCRRCPLRFMWKSNLKAHFVMDHAHEVAKEVEVNRCFECFLCQRKFSQQRDLTRHMTSNHSADSEIHYCLLCPKTFYGNDHLNDHLNRHRLTMDDINSVESIIHSTCWPNGEKIIRCKICGLEFSSMKNLSEHLSPSNPQNLCAVQHSLANYSITNHKGFELHLELDSDTDTEDMGHSNEDDAPDQHKDKYYPYTCSLCNVSCKRKYQMAQHQRSMHNYEGLVLKCENCTFRTVCQKILDYHKTTQCFNTEKQYQCVRCKFKFMWQENLENHIAMLHPPKDNCKAQDEEPADSKPLDKLVSSNKNDPNIFECMDCHRRYNRRDRYKAHFKKFHNNDTAEPSGENPSNSKVRKQAIPKKDKNFLCAFCGLSFSNNSNLTVHMRRHTGEKPFKCDLCDMAFPRSSDLHAHRRTHTGERPYKCMYCEKSFSRQYKLNVHTRIHTGERPYQCTYCEKSFIQSNDLTLHLRRHTGERPYLCDICGEGFICATSLKQHRNSKGHLENNAQIEERLPNSAHFEMHF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00716939;
90% Identity
-
80% Identity
-