Lobt048483.1
Basic Information
- Insect
- Leucophora obtusa
- Gene Symbol
- -
- Assembly
- GCA_949987735.1
- Location
- OX465299.1:8603154-8606427[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00033 0.035 16.3 4.9 1 23 69 92 69 92 0.97 2 21 0.00092 0.098 14.9 0.7 1 23 99 122 99 122 0.97 3 21 0.017 1.8 10.9 1.3 1 23 127 149 127 149 0.97 4 21 0.00083 0.088 15.0 1.0 1 23 155 178 155 178 0.91 5 21 0.0011 0.12 14.6 1.6 1 23 184 206 184 206 0.99 6 21 9.9e-06 0.001 21.1 1.4 3 23 214 234 213 234 0.97 7 21 0.0083 0.88 11.9 1.7 1 23 240 263 240 263 0.98 8 21 4.9 5.2e+02 3.2 1.8 3 10 377 384 376 398 0.84 9 21 0.0026 0.27 13.5 2.6 1 23 405 428 405 428 0.96 10 21 4.1e-05 0.0043 19.2 0.3 1 23 433 455 433 455 0.98 11 21 0.00061 0.064 15.5 1.5 1 23 461 484 461 484 0.91 12 21 2e-05 0.0021 20.1 1.2 1 23 490 512 490 512 0.98 13 21 6e-05 0.0064 18.6 0.9 3 23 520 540 519 540 0.97 14 21 0.0055 0.58 12.5 2.0 1 23 546 569 546 569 0.97 15 21 2.4 2.5e+02 4.2 1.2 2 12 684 694 683 702 0.87 16 21 0.002 0.22 13.8 1.2 1 23 713 736 713 736 0.96 17 21 0.0001 0.011 17.9 0.0 1 23 741 763 741 763 0.98 18 21 0.0042 0.45 12.8 0.6 1 23 769 792 769 792 0.94 19 21 0.00056 0.06 15.6 0.8 1 23 798 820 798 820 0.99 20 21 0.00014 0.015 17.5 3.7 3 23 828 848 827 848 0.97 21 21 0.025 2.7 10.4 1.6 1 23 854 877 854 877 0.97
Sequence Information
- Coding Sequence
- ATGGTCGAGTTGACCAGTGCACTTTTAAGTGAGCATAACATAGAACTTAAAGATGGGCACCTATCCGACGCCATAGAACAAATAAAATCTTGGTATTACATTGCTAAACAACGCCATGGCAAGCTATATAATAAATTGAATCAGGCCGAAGAGGATTATTTCAAACAATGCAAATTTATGCCAGAAAAACgattaaaacttaaatatacTTGTAAAATCTGCAACAAAAACTTCAATATGGAACACAATTTTAAGACTCACATGTACAAAGTCCATCAGGAAGGAGATTTACCTTTTCAATGTAACGTGTGTGGAAAAAAATTTGATGCGAAAACCACTGTATCGATGCACATACAAAGAATGCACCGCATTAGAAACTATTCATGTAATGTTTGTCATAAATTATTTGCTCTACCATCGGAATTAAAGTTTCATTACATGGTACATACCGCTGAAAAGAACCATGTCTGTGAATTATGTGGAAAAGCGTTTAGAATAAAGACTCAATTGCGCTATCATCGTACAGCTATACACACGAAAATACGGGCATACAAATGCACCATGTGCCCCAAGGATTTTCTAAAGAAACGCGATTTAACCGATCATGTAAAAACTCACTTAAATATACGGGATAAGATATGTGAAACATGTGGCAAAGGGTTTTCCAATAGCCATTCGTTGATACGACATCGTCAAATACATTCGGAAGTTAAAAGATATGAATGTAAACTATGCGATGCTAAATTTCATCAGTTTGTTGGGCTTAATGGTCACATGAAGCGAACTCACAATATTAAACCATTAACTTTGAATCAATGGAATGAAACCACCTCTAAATTCATCGAAACATATGAGAAATTTCCTATCCTCTACGATGAAAAACATCCACAATATGGCCAATTTGAAGATAAACAAAACGCAGTGATTGAACTACTTAAATTACTGCTGAATCAATACAACATAGTTTTCAAAGAAGAAACTCTGTCCGATGCCATTGAACAGTTACAAATGTGGTATTATCGTATCAAACGCAACGGAAAAGGAgacaataatttaaaaaacgatgaagataaatatttcaaaatgtGTAAATTTTTGCCTGCACAACGGctaaaagttaaaaatatatgtaaCATTTGCAACAAAAGATTTTATGCTGATCATGTTTTTAAGTGTCACCTGTTTAGAGATCATAAGATAGGAGGTTTGCCATTTCCTTGTGAGCATTGTGGAAAAAGATTTATATCTCTATCTTCTGTACAATGTCACATACAAAGAGTACATACTAAAAAACAATATGAATGtgaattttgtaaaaaatcattTGCTATACCAtcagaattaaaaaatcataCTCTGATACATACTGCTGAGAAACCCCATGTTTGTGAACAATGTGGTAAAGGTTTTAGATTAAGAAACCATTTGAATAATCATGTTACAGCTATACACACAAAGATACGGGCTTTTAAATGTACCATGTGTCCCAAGGATTTCAAAAAGAACCGCGATTTGACCGATCACATAAAAGCACATTTGAATATACGTGATAAAATATGTGAAACTTGCGGTAAAGGGTTTTCGAATGTCCATTCGTTAATACGACATCGACAGATTCATTCGGAAGTTAAAAGATATGCTTGTAAATTGTGCGATGCTAAGTTTCATCAATTTGTGGGTCTTAATAGTCACATGAAACGAACGCACAATATTCAGAAACCATTAACCCTGAATCAAGAGAATGATACCGCCTCTAAATTCATCGATGCCTATGCTAAATTTCCTATTCTTTATGATGGGAAACATCCACTTTATGGTAAATTTGAAGATAGACAAAACGCTCTGACCGATTTTCGCAAAATCTTAATTACTCAGCACAACATAGATTTGAAAGAAGAAATCATATCTGATGCCATTGAGCAGTTAGAAATGTGGTATTACCTAACTAAACGCCGTAAAGGTAAACCagataataaattaaataaagacgaagagaattattttaaaaagtgTAATTTTTTGCCTGCAAAACGATTAAAAGTGAAGCTTGTCTGTAATATTTGcaataaacaattttatacAGATCACATTTACAAGTGTCATCTTTTTAAGGACCATAAAATAGGAGATTCGCCATTTCCTTGTGAACGATGTGGAAAGAGGTTTGTATCAAAATCAGCTGTACAGTGTCATATACAAAGAGTACATTCTGAAAAGAAATATCCGTGTGAATTTTGTGGAAAATCATACGCTATACCATCGGAACTAAGGATTCACACTTTGGTACACACGGCTGAGAAACCCCATGTATGTGAACTATGTGGCAAAGGTTTTAGATTAAGAAACAATTTGGGTCTTCATGTTACACGCATGCATACCAAGATACGTGCCTTTAAGTGTACAATGTGTCCTAAGGATTTTCTTAAGAATGTCGATTTAAGAGATCATATAAAAACACATTTGAACATACGTGACAAGATATGTGAAACGTGCGGTAAGGGATTCACAAACTGCCATTCATTGATACGACATCGACAAATACATTCAGAGGTCAAGAAATTCGCCTGTAAATTGTGTGATGCTAAATTTCATCAATTTGTGGGCCTAAATGGTCATATGAAACGAACTCATAATATTGTACGGAAAGATGGAAACCATTAA
- Protein Sequence
- MVELTSALLSEHNIELKDGHLSDAIEQIKSWYYIAKQRHGKLYNKLNQAEEDYFKQCKFMPEKRLKLKYTCKICNKNFNMEHNFKTHMYKVHQEGDLPFQCNVCGKKFDAKTTVSMHIQRMHRIRNYSCNVCHKLFALPSELKFHYMVHTAEKNHVCELCGKAFRIKTQLRYHRTAIHTKIRAYKCTMCPKDFLKKRDLTDHVKTHLNIRDKICETCGKGFSNSHSLIRHRQIHSEVKRYECKLCDAKFHQFVGLNGHMKRTHNIKPLTLNQWNETTSKFIETYEKFPILYDEKHPQYGQFEDKQNAVIELLKLLLNQYNIVFKEETLSDAIEQLQMWYYRIKRNGKGDNNLKNDEDKYFKMCKFLPAQRLKVKNICNICNKRFYADHVFKCHLFRDHKIGGLPFPCEHCGKRFISLSSVQCHIQRVHTKKQYECEFCKKSFAIPSELKNHTLIHTAEKPHVCEQCGKGFRLRNHLNNHVTAIHTKIRAFKCTMCPKDFKKNRDLTDHIKAHLNIRDKICETCGKGFSNVHSLIRHRQIHSEVKRYACKLCDAKFHQFVGLNSHMKRTHNIQKPLTLNQENDTASKFIDAYAKFPILYDGKHPLYGKFEDRQNALTDFRKILITQHNIDLKEEIISDAIEQLEMWYYLTKRRKGKPDNKLNKDEENYFKKCNFLPAKRLKVKLVCNICNKQFYTDHIYKCHLFKDHKIGDSPFPCERCGKRFVSKSAVQCHIQRVHSEKKYPCEFCGKSYAIPSELRIHTLVHTAEKPHVCELCGKGFRLRNNLGLHVTRMHTKIRAFKCTMCPKDFLKNVDLRDHIKTHLNIRDKICETCGKGFTNCHSLIRHRQIHSEVKKFACKLCDAKFHQFVGLNGHMKRTHNIVRKDGNH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00716938;
- 90% Identity
- iTF_00716938;
- 80% Identity
- -