Ehis039587.1
Basic Information
- Insect
- Eustalomyia histrio
- Gene Symbol
- -
- Assembly
- GCA_949748255.1
- Location
- OX456527.1:3976914-3979712[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00054 0.056 15.3 1.0 1 23 9 32 9 32 0.91 2 18 0.00074 0.078 14.9 1.6 1 23 38 60 38 60 0.99 3 18 6.4e-06 0.00067 21.4 1.4 3 23 68 88 67 88 0.97 4 18 0.0054 0.57 12.2 1.7 1 23 94 117 94 117 0.98 5 18 5.2 5.4e+02 2.8 5.2 1 19 225 243 225 248 0.76 6 18 3.7e-05 0.0039 19.0 0.5 1 23 255 278 255 278 0.96 7 18 9.1e-06 0.00096 20.9 0.2 1 23 283 305 283 305 0.98 8 18 0.00062 0.065 15.1 1.3 1 23 311 334 311 334 0.91 9 18 1.3e-05 0.0014 20.4 1.2 1 23 340 362 340 362 0.98 10 18 6.9e-06 0.00072 21.3 1.4 3 23 370 390 369 390 0.97 11 18 0.0036 0.38 12.7 2.0 1 23 396 419 396 419 0.97 12 18 0.12 12 8.0 4.1 2 23 533 555 532 555 0.94 13 18 0.0013 0.13 14.2 0.1 1 23 562 585 562 585 0.96 14 18 0.00037 0.039 15.9 0.0 1 23 590 612 590 612 0.97 15 18 0.0027 0.29 13.1 0.6 1 23 618 641 618 641 0.94 16 18 0.00037 0.038 15.9 0.8 1 23 647 669 647 669 0.99 17 18 8.9e-05 0.0094 17.8 3.7 3 23 677 697 676 697 0.97 18 18 0.016 1.7 10.7 1.6 1 23 703 726 703 726 0.97
Sequence Information
- Coding Sequence
- ATGGTGCATACTGCTGAAAAGAATCATGTCTGCGAACTGTGTGGTAAAGCGTTTAGAATAAAGACTCAATTGCGCTACCATCGTACAGCTATTCACACGAAAATACGGGCTTACAAGTGTACCATGTGTCCCAAGGATTTTCTAAAGAAACGCGATTTAACCGATCATGTGAAAACTCACTTAAATATTCGAGATAAAATATGTGAAACATGTGgcaaagggttttccaatagccATTCATTAATACGACATCGTCAAATACATTCAGAAGTTAAAAGATACGAATGTAAATTATGCGATGCTAAATTTCATCAGTTTGTTGGTCTTAATGGTCACATGAAGCGAACTCACAATATTaaacCATTAACATTGCATCAATGGAATGAAAGCACCTCTAAATTCATCGAAACATATGCTAAATTTCCTATACTTTACGATGAAAAACATCCACAATATGGTCAATTGGAAGATAAACAAAATGCAGTagttgaatttcaaaatttactaCTGAGTCAATACAACATAGATTTCAAAGAAGACACTCTGTCCGATGCCATTGAACAGTTGCAAATGTGGTATTACCGTATCAAACGTAAATGTAAACGAGATAAAGACGAAGATATATATTtccaaatgtgcaaatttttaccAGCACAacgtttaaaagtaaaatatgtcTGTgcaatttgcaacaaaaaattttataccgaTCATGTTTTCAAGTGTCATCTGTTTAAAGATCACAAGATAGGAGATTTGCCATTTCCTTGTGAGCAATGCGGAAAAAGATTCACCTCTCTATCTTCTGTGCAATATCATGTACAAAGAGTACACTCTAAGAAACAATATGAATGtgagttttgcaaaaaatcatttgCAATACCATCAGAGTTAAGAAATCACATTCTAATACATACTGCTGAGAAACCACATGTTTGTGAACAATGCGGTAAAGGTTTTCGATTAAGAAACCATTTAAATATTCATGTTACAGCTATGCACACAAAGATACGGGCTTTTAAATGTACCATGTGTCCCAAGGATTTTAAAAAGAACCGTGATTTGACCGATCACATAAAAGCACATTTGAACATACGTGATAAAATATGTGAAACTTGTGGTAAAGGGTTTTCAAATAACCATTCGTTAATACGACATCGTCAAATACATTCGGAGGTTAAAAGATATGCTTGTAAATTATGCGACGCTAAATTTCATCAATTTGTGGGTCTTAATAGTCATATGAAACGGACACATAAGATTaaacCATTAACACTGAATCAAGCGAATGAAACCGCCTCTAAATTCATCGATACCTATGCTAAATTTCCTATTCTTCATGATGGGAAACATCCACTTTATGGTAAATTTGAAGATAAACAAAATGCTTTGaatgattttcataaaatccTACTAAGTCAGCACAACATAGATTTCACACAAGAAATCATATCTGATGCCATTGAACAGTTACAAATATGGTATTACCTTACTAAACGCCGTAAAGGTAAaccagaaaataaattaaataaagacgaagagaattatttaaaaatgtgtaattttttgcCTGCAAAACGATTAAAAGTGAAGATTGTCTgtaatatttgtagtaaacatttttatacagaTCACGTTTACAAGCGTCATCTTTTTAAGGACCATAAAATAGGAGATTCGCCATTTCCTTGTGAAAGATGTGGAAAGAGGTTTGATTCAAAACCATCTGTACTGGGTCATATTCAAAGAGTACATTCTGAAAAGAAATATGCTTGTGAATTTTGTGGAAAATCATTTGCTATACCATCGGAAGTAAGGATTCACACTTTGATACACACGGCCGAGAAGCCCCATGTATGTGAACTGTGCGGCAAAGGTTTTAGATTAAGAAACAATTTGGGTCTTCATGTTACACGTATGCATACCAAGATACGTGCCTTTAAATGTACAATGTGCCCTAAGGATTTCCTTAAGAATGTCGATTTAAGAGATCACATAAAAACACATTTGAACATACGCGACAAGATATGTGAAACGTGTGGTAAGGGATTCACAAATTGTCATTCGTTGATACGACATCGACAAATACATTCAGAGGTCAAGAAGTTTGCCTGTAAATTGTGTGATGCTAAATTTCATCAATTTGTGGGCCTAAATGGTCATATGAAACGAACTCATAATATTGTAAGAAAAGATGGAAACCATTAA
- Protein Sequence
- MVHTAEKNHVCELCGKAFRIKTQLRYHRTAIHTKIRAYKCTMCPKDFLKKRDLTDHVKTHLNIRDKICETCGKGFSNSHSLIRHRQIHSEVKRYECKLCDAKFHQFVGLNGHMKRTHNIKPLTLHQWNESTSKFIETYAKFPILYDEKHPQYGQLEDKQNAVVEFQNLLLSQYNIDFKEDTLSDAIEQLQMWYYRIKRKCKRDKDEDIYFQMCKFLPAQRLKVKYVCAICNKKFYTDHVFKCHLFKDHKIGDLPFPCEQCGKRFTSLSSVQYHVQRVHSKKQYECEFCKKSFAIPSELRNHILIHTAEKPHVCEQCGKGFRLRNHLNIHVTAMHTKIRAFKCTMCPKDFKKNRDLTDHIKAHLNIRDKICETCGKGFSNNHSLIRHRQIHSEVKRYACKLCDAKFHQFVGLNSHMKRTHKIKPLTLNQANETASKFIDTYAKFPILHDGKHPLYGKFEDKQNALNDFHKILLSQHNIDFTQEIISDAIEQLQIWYYLTKRRKGKPENKLNKDEENYLKMCNFLPAKRLKVKIVCNICSKHFYTDHVYKRHLFKDHKIGDSPFPCERCGKRFDSKPSVLGHIQRVHSEKKYACEFCGKSFAIPSEVRIHTLIHTAEKPHVCELCGKGFRLRNNLGLHVTRMHTKIRAFKCTMCPKDFLKNVDLRDHIKTHLNIRDKICETCGKGFTNCHSLIRHRQIHSEVKKFACKLCDAKFHQFVGLNGHMKRTHNIVRKDGNH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00892978;
- 90% Identity
- iTF_00892978;
- 80% Identity
- -