Lobt029491.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leucophora obtusa
Gene Symbol
ZNF275
Assembly
GCA_949987735.1
Location
OX465297.1:8090837-8095951[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 7.3e-05 0.0077 18.4 0.2 1 23 188 210 188 210 0.95
2 15 0.00057 0.06 15.6 0.9 1 23 216 238 216 238 0.99
3 15 2e-05 0.0021 20.1 0.8 1 23 282 304 282 304 0.98
4 15 1.2e-05 0.0013 20.8 0.3 1 23 422 444 422 444 0.96
5 15 0.056 6 9.3 0.5 1 23 450 472 450 472 0.95
6 15 7.3e-06 0.00077 21.5 0.3 1 23 489 511 489 511 0.98
7 15 0.026 2.8 10.3 0.3 1 23 520 543 520 543 0.95
8 15 0.0041 0.43 12.9 4.8 1 23 549 571 549 571 0.98
9 15 0.00032 0.034 16.3 0.4 2 23 578 599 577 599 0.97
10 15 3.9e-08 4.2e-06 28.6 0.7 1 23 605 627 605 627 0.96
11 15 0.0027 0.28 13.4 2.1 1 23 633 655 633 655 0.99
12 15 7.2e-05 0.0076 18.4 1.6 1 23 661 683 661 683 0.96
13 15 6e-05 0.0063 18.6 3.2 1 23 689 711 689 711 0.99
14 15 3.8e-06 0.00041 22.4 0.7 1 23 717 739 717 739 0.99
15 15 9.9e-05 0.011 17.9 0.3 1 23 745 767 745 767 0.97

Sequence Information

Coding Sequence
atgTCCGGTGATTTCGACAAGAAGTGCCGCACTTGTTTGTGCGATTCTCATATATTCCATCAACTTTATGATTATGTGGATGAAAATTATAAAGTTTTGGAAATGTTGGATGATATAGTGCCACAAATAGCTATAAAGACCACATCAAAGTTTTCCACTTTGGTGTGTCAATCTTGTGTTGATAAATTAGTGACCAGTTATAAATTTCAACAATTATGTATTGAAACTAACAATCGTCTGCAAGATGTAATGGGCATAGCAGCCTTTGATGTTGCCGAACCTAAGTTGGAGAAACTGCTTGATCCGTTGACGGGAGAAGCAAGTTTTAAAATGAAAGAAGAAGTTGTTGATGATGCTTGTTTTGAATGTGAAATTAATCCTGAAGATCTAGAGGAAGCAATGAGATCAGATAATGATTGGGGACCGAGCCAATATAATGACTATGATACAGATTCTAGCAATGAAAAACTATCAGTTTTAAAAGAtagaaaaactaaaaagtgTCCCTTAAAAATTGGAGCAATTGAAAAaCCCAATAATAAAAATCGTCGCAAAGGACATTTTCCTTGTACTGAATGTGGAAAAGTATTTGATCGTGTATATCGTTTGAAACGCCACGGAGCTGTACACACAAAATTGCGTGCTTATCGCtgtaaaatttgtaaatataGTTATGCGGCCGAGAAAACGTATAATGCTCATATGTTGACTCATGAAAATGAACAATTTACCAGTAAAGAGGAGGTAGACGTTGATGATCAAAATGAAAGTAAAGAATTTAATGATATTATTGAAAAGAACGACAATAAGGAAGAAAAAGATATTGTTAAAGAATTGCAGACATTTCAATGTCCTAAATGCCCTAAATATTTTGAGAAAAAAGCTTCTTTATCGGCTCACTATAAAGTTCATACGAAAAAACCCAAAAGTAGTCCAAAcaaagattttaaaaatgaagACGGGTTAGAAAAAGAGGAAAGAACAGAGAATAGCAAGAAAATTGAAGCTTTAGATATGGAGAACGTACCCAACGTTATTGTAAAAGAGGAACTAGAAGTAACACCCCAAATATATGAAGAACCCATGGATGATTTTAATGCCAATGCGGAATGGTTTAATAATGATTACGATGATTCAGAtgataattctgaaaaaaattttattactaAGACCGGAGCCAAACAGCCCAAGAATATCGATTTCGTTGACACAGGCATAGGAGAAATTGAAAAACCCAACAGCAGTAATAAAAGGAATGGTACTTTCCCTTGCGAAGTATGTGGTAAAGTGTTTGATCGTCCTTATCGTTTGAAACGTCATAGTTCTGTACATTCACTGGCTAGACCACATGAATGCGAAATTTGTAAATATCGTTTTGCCACTGTCAATATTTTAAAAGCTCATCTAATACAACACGAAGGTGATGGTACCGGTAATTTGGCCTCCCAATCACGACCAGAAGGTTTTAAGTGTCCAGACTGTCCAAGACGTTTTGAGAAACAAGCTTCTTTATCGGCTCATCGACAAATACACACCCGCAATGCGACAGAAGCTAATTATCCTTGCATGGTTTGTCAACGCCCCTTCATGTCGGTAAGATCTTTAACCGAACACATTACCAATAAACATCCAGAAGTAGAAAAACACAAATGCGATCAATGTGAAAAAACGTTTGTACTACATGCTCATTTGGTGGAACATTTGAACAGGCATAAGGGCAATAGAAATCTGGTATGCTTAATATGTGAAAAAGAATTTGGTTATACGAATACTTTAAAAGAACATATGCGTACGCATAGTGGTGAAAGTCCTTATTTATGTCCTCAATGCGGTAAAACATTTCGAAGTGCTAGTAATTTACGTCAACATATGGAACGACATACGGGCTTAAAAAAATATCAGTGTCCAGAATGCCCCAGTCGTTTTAACTGTCGTTCTGATTTGATTAAACATACATCAACACATAGTAATGCTAAGCCACATGTATGTGATATATGTGGTTCCCGTTTTACGCGAGCCTATTCATTACAAAAGCACAAGCTGTTACATTCTGGAGAGAGGCCATTTAAATGTGATCAATGTAGTATGACATTTGCTATTATTTACCATTTGCGACGACACATGCGTACCCATACAGGCGAGAAACCTTACAAATGTAAATATTGTGAACGTGCCTATGCTGAAAGTGGAGATTTAACAAAACATTTAAGAACTCATGTTGGTGAAAATACATATATGTGTGATCAATGTCCCATGGCTTTTAAATATCAAGCCGAATTAAGGCAACATCAATCGGAACATTATAAAATGGCCCAAAAGCTTTTATTACAACAAGCACAAAAGATGTCTGAAGAAGCGCAGCAACAAGAAATAACTGAACAACAACACAATGAGCAACAGCAATTACCCATACAACAGTTAATGATAACGAATCAAAATCAACATTTATTAATTAAACTGCCGAGTCACCAGCAGCAAATGCCATTGGTAGATCACAGCCATCAACAACTGCCGATAATACAAGAGCAAACTCAGCAGCAACATATAAAAATTGACGAAGCACCCCAAGACAATGTAGATATTAAGAATCTCACAGCttaa
Protein Sequence
MSGDFDKKCRTCLCDSHIFHQLYDYVDENYKVLEMLDDIVPQIAIKTTSKFSTLVCQSCVDKLVTSYKFQQLCIETNNRLQDVMGIAAFDVAEPKLEKLLDPLTGEASFKMKEEVVDDACFECEINPEDLEEAMRSDNDWGPSQYNDYDTDSSNEKLSVLKDRKTKKCPLKIGAIEKPNNKNRRKGHFPCTECGKVFDRVYRLKRHGAVHTKLRAYRCKICKYSYAAEKTYNAHMLTHENEQFTSKEEVDVDDQNESKEFNDIIEKNDNKEEKDIVKELQTFQCPKCPKYFEKKASLSAHYKVHTKKPKSSPNKDFKNEDGLEKEERTENSKKIEALDMENVPNVIVKEELEVTPQIYEEPMDDFNANAEWFNNDYDDSDDNSEKNFITKTGAKQPKNIDFVDTGIGEIEKPNSSNKRNGTFPCEVCGKVFDRPYRLKRHSSVHSLARPHECEICKYRFATVNILKAHLIQHEGDGTGNLASQSRPEGFKCPDCPRRFEKQASLSAHRQIHTRNATEANYPCMVCQRPFMSVRSLTEHITNKHPEVEKHKCDQCEKTFVLHAHLVEHLNRHKGNRNLVCLICEKEFGYTNTLKEHMRTHSGESPYLCPQCGKTFRSASNLRQHMERHTGLKKYQCPECPSRFNCRSDLIKHTSTHSNAKPHVCDICGSRFTRAYSLQKHKLLHSGERPFKCDQCSMTFAIIYHLRRHMRTHTGEKPYKCKYCERAYAESGDLTKHLRTHVGENTYMCDQCPMAFKYQAELRQHQSEHYKMAQKLLLQQAQKMSEEAQQQEITEQQHNEQQQLPIQQLMITNQNQHLLIKLPSHQQQMPLVDHSHQQLPIIQEQTQQQHIKIDEAPQDNVDIKNLTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00716936;
90% Identity
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80% Identity
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