Basic Information

Insect: Leucophora obtusa
Gene Symbol: -
Assembly: GCA_949987735.1
Location: OX465298.1:177898993-177907925[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1e-05 0.0011 21.0 1.3 1 23 197 219 197 219 0.97

2 18 0.0002 0.021 17.0 0.5 1 23 225 247 225 247 0.97

3 18 8.8e-05 0.0093 18.1 0.6 1 23 253 275 253 275 0.98

4 18 6.5e-06 0.00069 21.7 3.0 1 23 281 303 281 303 0.97

5 18 8.7e-05 0.0092 18.1 4.7 1 23 309 331 309 331 0.99

6 18 0.00016 0.017 17.3 5.7 1 23 337 359 337 359 0.97

7 18 7.5e-07 7.9e-05 24.6 4.3 1 23 365 387 365 387 0.98

8 18 2.8e-07 3e-05 26.0 2.4 1 23 393 415 393 415 0.97

9 18 0.00016 0.017 17.3 6.7 1 23 421 443 421 443 0.97

10 18 0.00028 0.03 16.5 6.5 1 23 449 471 449 471 0.98

11 18 2.5e-05 0.0027 19.8 4.5 1 23 477 499 477 499 0.98

12 18 9.5e-05 0.01 18.0 8.3 1 23 505 527 505 527 0.98

13 18 4.7e-06 0.0005 22.1 7.7 1 23 533 555 533 555 0.98

14 18 1.7e-06 0.00018 23.5 7.7 1 23 561 583 561 583 0.98

15 18 0.00052 0.055 15.7 9.5 1 23 589 612 589 612 0.95

16 18 0.00044 0.047 15.9 0.5 1 23 618 640 618 640 0.97

17 18 0.00064 0.068 15.4 4.5 1 23 650 672 650 672 0.98

18 18 2.3e-05 0.0024 19.9 1.6 1 23 678 701 678 701 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1e-05	0.0011	21.0	1.3	1	23	197	219	197	219	0.97
2	18	0.0002	0.021	17.0	0.5	1	23	225	247	225	247	0.97
3	18	8.8e-05	0.0093	18.1	0.6	1	23	253	275	253	275	0.98
4	18	6.5e-06	0.00069	21.7	3.0	1	23	281	303	281	303	0.97
5	18	8.7e-05	0.0092	18.1	4.7	1	23	309	331	309	331	0.99
6	18	0.00016	0.017	17.3	5.7	1	23	337	359	337	359	0.97
7	18	7.5e-07	7.9e-05	24.6	4.3	1	23	365	387	365	387	0.98
8	18	2.8e-07	3e-05	26.0	2.4	1	23	393	415	393	415	0.97
9	18	0.00016	0.017	17.3	6.7	1	23	421	443	421	443	0.97
10	18	0.00028	0.03	16.5	6.5	1	23	449	471	449	471	0.98
11	18	2.5e-05	0.0027	19.8	4.5	1	23	477	499	477	499	0.98
12	18	9.5e-05	0.01	18.0	8.3	1	23	505	527	505	527	0.98
13	18	4.7e-06	0.0005	22.1	7.7	1	23	533	555	533	555	0.98
14	18	1.7e-06	0.00018	23.5	7.7	1	23	561	583	561	583	0.98
15	18	0.00052	0.055	15.7	9.5	1	23	589	612	589	612	0.95
16	18	0.00044	0.047	15.9	0.5	1	23	618	640	618	640	0.97
17	18	0.00064	0.068	15.4	4.5	1	23	650	672	650	672	0.98
18	18	2.3e-05	0.0024	19.9	1.6	1	23	678	701	678	701	0.96

Sequence Information

Coding Sequence: ATGCAACATATATCATCAGCTTCATCTGTAACTCCGGCTTCTTCTGGAGCTACTACCATAACATTAGGTACACCCAAGACCGAAATCAAAGATGATGGCAGTGTTGTTATGAGTGGAAAATTACACCCTGGCATTGAAATGTATAAAGTGAATATTGAGGATATATCTCAACTATTTACCTATCATGAGGTATTTGGTAAAATACATGGAGATGTTATGAGTCATCCATTAGCCCAAGTACATGCTTCCTTACCAACAGCTTCTACTGATAATAACAATATAGGTACAGCTGTTTCTACTACTACCGCTAGTCCAATGGATACATCGACAGGGGGAGTCACTGTGGTGACAAACAGCAGACCACCTAATACTGAATCGATCAGTACAAGCACAGCAGAAGGTGGCTGTGGTACAGGTGTTGTAGCTTCTACAAGTACAGCAAATACAACCGCAACAGCTACCACCACATCTGGAGCGACTACTGGTGGTATTGGCCTGTTAATGCCGAAAATGGAAGGAGGCATTGCAAATGTGGAACAGAATACCGTAACTTTAGCTCCTGATGGTACTGTGGTCTCTACAGGTGAACATGTATGCGATATTTGCGGTAAAATGTTTGCATTTCGCTATCAATTAATTGTACATCGTCGCTATCATACCGAACGAAAGCCATTTAATTGTCAAGTCTGCGGTCAGGGTTTCTTTACCTCACAAGATCTAACACGTCATGGCAAAATACATATTGGTGGACCGATGTTTACCTGCTTAGTGTGTTTTAATGTTTTCGCCAATAATGCCTCTTTGGAACGTCATATGAAACGTCATTCGACAGATAAACCATTTGCATGTACCATATGTCAGAAAACATTTGCTCGTAAAGAACATTTGGAAAATCATTTTCGTTCACACACTGGAGAGACGCCATTTCGATGTCAGTACTGTGCTAAAACATTTACACGTAAAGAGCATATGGTTAATCATGTACGCAAGCATACGGGAGAGACACCACATCGTTGTGACATTTGTAAGAAATCATTTACGCGTAAGGAACATTATGTTAATCATTATATGTGGCATACTGgTCAAACACCTCATCAATGTGAAGTGTGTGGTAAAAAATATACACGTAAAGAACATTTAGCAAATCATATGCGCTCCCATACGAATGACACCCCATTTCGTTGTGAAATTTGTGGCAAAAGCTTTAGTCGTAAAGAACATTTTACCAATCATATACTATGGCATACAGGAGAAACACCCCATCGCTGTGATTTCTGTTCAAAAACTTTTACACGTAAGGAACATTTATTAAATCATGTACGTCAACATACTGGCGAATCGCCACATCGTTGCTCATATTGTATGAAAACGTTTACGCGCAAAGAACATTTGGTCAATCATATACGTCAACATACCGGCGAAACGCCGTTCAAGTGTACTTATTGCACCAAAGCCTTTACACGTAAAGATCATATGGTTAATCATGTACGTCAACATACTGGTGAATCACCGCATAAATGTACATTCTGTACAAAAACTTTTACGCGCAAAGAACATTTGACGAATCATGTGCGACAACATACCGGAGAATCACCACATCGTTGCAGTTATTGCAAAAAAACTTTTACACGTAAGGAACATCTAACAAATCATATACGTTTGCATACTGGAGATTCGCCGCATAAGTGTGAATATTGTCAGAAGACATTTACTCGCAAGGAACATCTTAATAATCATATGCGTCAACATTCTAGTGATAATCCACATTGTTGTAATGTTTGCAATAAGCCTTTTACGCGTAAAGAACATTTAATAAATCATATGTCACGTTGTCATACTGGTGATAGGCCTTTTGCTTGCGAAACTTGTGGAAAATCTTTCCCACTTAAGGGTAATTTATTGTTCCATCAACGTAGTCATACTAAGGGTCAAGAAATGGAGCGACCATTTTCCTGTGAGAAATGTCCCAAGACATTTATTTGTAAAGgACATTTGGTATCTCATATGCGTTCTCATTCTGGCGAGAAACCACACGCTTGTACTTTGTGCAGTAAAGCATTTGTAGAAAGAGGAAATTTGAAACGTCACATGAAAATGAATCATCCAAATGCTCCTATGCCACCACCTCCAGTGCCACATCCAGTTATACCAGCGGGAGTTTTGCCTCAAATTAAACAAGAAGTTAAACCAGTTATAAGTGAATTAAATTCAACAGGTCCTACTATGCACACCATACAACATATAACGGCAGTAGGTGGAGCAGCAACACCAGCAAATGTTGTTCAATTAACAACTGGTTTGGTGCCTTTGGTAACCTCAACCATAACATCGCATTCGACACAAAAACAATCACCACCACAAGCACAGGCTCAAGCACAACAACAATTGCAACAGCAACAAGTGGTAACAACACATCAACAGGTTACAGCTCATCAACAAGTTTTgcaacagcagcaacaacagcaacaacaacagcagcaacaacaacaacagcagcagcaacaacagcagcagcagcaacaacagcagcagcaacaacagcagcagcagcagcaacaacagcagcagcaacaacagcagcaacaacaacagcagcagcaacaacagcagcagcaacaacagcagcagcagcaacatCAACAAAATCAGTTATTACAGCTTTCTATACAACAAGCAGCTGCAGCTGCAGCAGCAGCCGCTCATCAACATTtacaacagcaacaacaacatcaaGACCAACATCGTCAACATCatcagcaacaacaacagcagcagcaacaacaacagaCACAACAACAAGGTCATCATCAACAACAGACAGCCTCTAATGTTACTGTTGTTGCTAGTGGTCACCAACAACAACCCTctcaacaacaacaaccaacACAAACTCAACAACAACCACCACAAGTGCCAATCGCTTTGATACAAACCGATCAGGAAGCTTTGGCACGCGCTACCATGCAACAATTGCAGCATATGCCAGCTAATGTTGAACAACATCCAGTTGTTTACTAA
Protein Sequence: MQHISSASSVTPASSGATTITLGTPKTEIKDDGSVVMSGKLHPGIEMYKVNIEDISQLFTYHEVFGKIHGDVMSHPLAQVHASLPTASTDNNNIGTAVSTTTASPMDTSTGGVTVVTNSRPPNTESISTSTAEGGCGTGVVASTSTANTTATATTTSGATTGGIGLLMPKMEGGIANVEQNTVTLAPDGTVVSTGEHVCDICGKMFAFRYQLIVHRRYHTERKPFNCQVCGQGFFTSQDLTRHGKIHIGGPMFTCLVCFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLENHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCEVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTFCTKTFTRKEHLTNHVRQHTGESPHRCSYCKKTFTRKEHLTNHIRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQEMERPFSCEKCPKTFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPNAPMPPPPVPHPVIPAGVLPQIKQEVKPVISELNSTGPTMHTIQHITAVGGAATPANVVQLTTGLVPLVTSTITSHSTQKQSPPQAQAQAQQQLQQQQVVTTHQQVTAHQQVLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQNQLLQLSIQQAAAAAAAAAHQHLQQQQQHQDQHRQHHQQQQQQQQQQQTQQQGHHQQQTASNVTVVASGHQQQPSQQQQPTQTQQQPPQVPIALIQTDQEALARATMQQLQHMPANVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00371431;
90% Identity: -
80% Identity: -