Lobt017718.1
Basic Information
- Insect
- Leucophora obtusa
- Gene Symbol
- MBD-R2
- Assembly
- GCA_949987735.1
- Location
- OX465295.1:347648304-347660816[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.6e-23 7.1e-19 69.0 0.1 4 76 418 488 415 489 0.93 2 2 0.46 5.9e+03 -1.3 0.0 38 63 916 939 914 957 0.82
Sequence Information
- Coding Sequence
- aTGGGTCGCCGGTGTTGTATTGCCGGTTGTACATCAACTTCACGCCTGCCCGAACATCATGGTGTTACCTATCATTCTTTTCCAGTAGATGAAAATACACGCTCTATTTGGATACGAAATACCAAATTAAGTGCTGATCGCAACATTACTAAAAGTGTTTTGGTATGTTCCAGACATTTTCGTCGTGCCGACTTTCAACCACAACGTAGtggaaaatatttgttaaagCAAAAGGTATTTCCTACTGTTTTTCCTTGGGGAAAAATTGAGACCACTCAAATAGAAGTAGATTTAGAATTTCTAAATTCTTCAGGTGTAGTTGCACCCAATACTCTACTGACACCATCGTCTGCAGTAGATGAAGACACTAAAGCTACAGTGGCCGCCACAGTGGCACAAATAATGGCACAGACGGCTGAATTAAATGCAGCAGCTGGTATAAAGTTGGAGAAACCCGATGATGATTTAGATACTTCTCTTACAAATAATTTGCTCATAGACGCGACTTCTCCTCCTGGTGTAAAGTTTGAACCCGTTACGTCGTTTAATCCCGGAGCGCGTTTAGAGGCACAAGATTTTGATGGTATATGGCATACAGCTCGTATTGTTGAAGTTGATAATGATGATCGTGAAGTTTTAATCAAATTCGAGAAAACCGGGAAGAATAAATCTACTATGGCAGGCACAGAAGAATGGATTCCTATGAATTCTTCTAGATTACGGCAACGTATTTCTACCAAACCAATTTTGAACTTTACTTTGGAAGAAAAATGTTTAGCCAGATGGTCGGGACCGCGTAAATTTCCTGGTACTGTTAAGAAAATTTTGCCAAATGATACTTATGAGATATTGTTCGATGACGGTTACATTAAAAATGTAAGAGCTATACATATGAGCAAGGTACAGACTAAGATTACTCAACCAATGATAGTTGAAAATGTTCCGGAGGAAATTCCCATAATTATGCCTACTACAACATCTACACCTTTGAGTACTCCAGTACCACCTGTAACACCTACTCCAACTGTTAAGAGGCCTTCATCTGGTCAAAATTCTGGCTCACAGCCCAAAAAACGTGCCCCCAATGGACCACGTAAAGATTGGCCATTATTGGATCTGTCTAAATTAGATTTACCTTCTTTAAATCTTCCCGAAATTCCTAAAGATGGCGAATGGACTTGTCATTGGGTTAACGATCAACCAATAGGTCGTGAGGGTTATTTAGTGGTGGGTGAACATCGTAAACCTACCGTAGTCGTAGAAGATTGGCGTTTACCACCCGGTTGGGTAAAGCATATGTATCAACGTTCTAATGTTTTGGGTAAATGGGATGTTATATTGGTGACACCAAACGGCAAACGTTTCCGTTCCAAAGCAGATCTTAAAACCTATTTAGAAGAACAGGGTCAAGTGTATAATCCTGATATTTACGATTTTAGTATACATCGTCGTAGAGCTAAAGATATAAATTGTTATGTTCATACGCCTGATTATGTACCGCAAACACCGGTGAAATCTAAACCATCTTTAAATGCATCATTAGATTCAAGTATCGAATCGAGTGTGGTAGGACCATTAACAACTAATGTAACATCACCATATATGGAAACACCAGTAGCTGAACCCTTACCGCCCATAGAATTGCTAACAACTTCTACTAGTTTGTCGGCGGAAGACAAAAGTGTAACACAAGTTGAGGCCGAGGTACCGAAACAACTTTTAGAATCTGCAGAGGTTAGTTCAACACCAACACCTACATCGACGCCAACGGTGGGCTTAAAGGAAGAAATTGTTGTTTCTGCAGATTGTGCTACACCCCCAGTAGTTGGTGGAATTGCATCGGAATCGCCAGTAGTTCAACCATTAGTAGAAGATGGTTTTGCTCTTATTGGTGGTTTAAAAGTTCAAATCATTGATAATTTATTCCGTTGTCCCCAGGAGGGTTGTTTGAAAAATTTCCGCAAAGAAAATCATTTACAAATTCATGTTAAACATTATCATCGCAATTTAGTCAAATTACTTGGTGCTTGTCCAAAAATGCTGGAATTAGCTGAAAAACGTACACATCCTTTGGAAAATGATATCAGCGAACCGGTACCCAAAAATCAAATACCCAATCAGCAGTTCTTTGCTAAATTACATCAACAAGATTTAGAACAAACACGAGCACATCGTAGAAGTGTAGGCGCATTGAAAACTACCATGGAGACCGGAGGTAGCGTAGAAATTAAAAACGAATTGATAGAGGGGACCTCAATCAAAACTGAAGATGGTTTGCAATTCGATAGTTCTCTTAATGAGACATCTTTAATTAATACAACCACAGCATCCAGTTCAGTAATGGATAACTCATATGCTTCGACCACAACAGCAGACACTTCATTGCCAACCGAAAATACTTTGGATGATATACCATTAATTAAAAGAGCTAGATTTAATCCATCAAAGAGATCTTCAGGAGCAAGAAAAAGTAATCGTCAAAGAACTACAAGGAAATATCTCACAGCAGCCCAAGCTACGGCTGGGGTGTCGGCCGCAGCTCCTCATACTCCGTTAACTGTAATGGCAGGAGATTCGACCTTTAGTGGTATGGTGGCTGAATTTGAAGAAACACGTCATTCTTTTAATGCCACTCCCGATATAAATAAAGATGCAAAAAAACGTAAACCCGTGTTAGCATCCAATACTCCCATGAGTAGTGTTGATTCTCCAATTACAGCCGATTCAGGTTCAAGTTCTCTTCAACCTAATTCGACGGAAGCTGAGACCAACAATCAGCCGCCACAATATATTAAAGAAAATGGTGAACTTATTAAAATTGTTCATATGAGACAAGAAGAAATTATCAATTGTCTATGCGATTACGTTACGGAAAATGGTTTAATGATACAGTGTGAATTATGTCTCTGTTGGCAACATGGCTATTGCTATGGCATAGAAAAAGAATCCCAAGTTCCAGACAAATATGTCTGTTATATGTGTCGTAATCCTCAAAGGAGTCGTGAGTCGATGCGTTTTAAACATGATCAAGATTGGCTATATGAAGGTAAACTACCAGTGGCTAATTACCATGCCACCAACAATGCCCAATTAAATAAAAGATTTCAATATCTTAAACGTTCTCATATCTTGACGGGTAATCTTTGCGAATTGAAGAATTATATGCATTCTTTGCAAGTTAAAATTAATATCGCCAATAATAAATGTCATCCAAAACTTTATCTATGGGCTAAGAAATGGGATGAGGATATGGAGCCAGTTAAAAGTGAAATTAAAACTGAATTCGAATTGGAAACAAAAGGAAATAGGATGAATTTATCACATACTCTGTCACCGAAAAAAGTAAAATCAGAGCCTACTACTCCGGCAAAATTGATACCAAATATACCACAGCCTGAGGCACCTATAGAGCCCATAGAATGTCAACAACGTTTGCTGGAACATCTTAAAATACAGCAGCAATTGGTTATGAACCGTTTAGGAGATATTGAAGCAGCTATAGATGatttggAACGCGAAGATGATATGCCCGATTTACGTGATGCTGATTTGGGTGCCACTAAAGATGTTTTGGCCGCTTTTATTAAAGAACTGGATACTGTCAACTATATTGCCAAATTGAATACTTTGGAACATACTAAATTGGAACATAAAAATTTCATGCCACCCgttaaataa
- Protein Sequence
- MGRRCCIAGCTSTSRLPEHHGVTYHSFPVDENTRSIWIRNTKLSADRNITKSVLVCSRHFRRADFQPQRSGKYLLKQKVFPTVFPWGKIETTQIEVDLEFLNSSGVVAPNTLLTPSSAVDEDTKATVAATVAQIMAQTAELNAAAGIKLEKPDDDLDTSLTNNLLIDATSPPGVKFEPVTSFNPGARLEAQDFDGIWHTARIVEVDNDDREVLIKFEKTGKNKSTMAGTEEWIPMNSSRLRQRISTKPILNFTLEEKCLARWSGPRKFPGTVKKILPNDTYEILFDDGYIKNVRAIHMSKVQTKITQPMIVENVPEEIPIIMPTTTSTPLSTPVPPVTPTPTVKRPSSGQNSGSQPKKRAPNGPRKDWPLLDLSKLDLPSLNLPEIPKDGEWTCHWVNDQPIGREGYLVVGEHRKPTVVVEDWRLPPGWVKHMYQRSNVLGKWDVILVTPNGKRFRSKADLKTYLEEQGQVYNPDIYDFSIHRRRAKDINCYVHTPDYVPQTPVKSKPSLNASLDSSIESSVVGPLTTNVTSPYMETPVAEPLPPIELLTTSTSLSAEDKSVTQVEAEVPKQLLESAEVSSTPTPTSTPTVGLKEEIVVSADCATPPVVGGIASESPVVQPLVEDGFALIGGLKVQIIDNLFRCPQEGCLKNFRKENHLQIHVKHYHRNLVKLLGACPKMLELAEKRTHPLENDISEPVPKNQIPNQQFFAKLHQQDLEQTRAHRRSVGALKTTMETGGSVEIKNELIEGTSIKTEDGLQFDSSLNETSLINTTTASSSVMDNSYASTTTADTSLPTENTLDDIPLIKRARFNPSKRSSGARKSNRQRTTRKYLTAAQATAGVSAAAPHTPLTVMAGDSTFSGMVAEFEETRHSFNATPDINKDAKKRKPVLASNTPMSSVDSPITADSGSSSLQPNSTEAETNNQPPQYIKENGELIKIVHMRQEEIINCLCDYVTENGLMIQCELCLCWQHGYCYGIEKESQVPDKYVCYMCRNPQRSRESMRFKHDQDWLYEGKLPVANYHATNNAQLNKRFQYLKRSHILTGNLCELKNYMHSLQVKINIANNKCHPKLYLWAKKWDEDMEPVKSEIKTEFELETKGNRMNLSHTLSPKKVKSEPTTPAKLIPNIPQPEAPIEPIECQQRLLEHLKIQQQLVMNRLGDIEAAIDDLEREDDMPDLRDADLGATKDVLAAFIKELDTVNYIAKLNTLEHTKLEHKNFMPPVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01165527;
- 90% Identity
- iTF_00892802;
- 80% Identity
- iTF_00892802;