Lobt038405.2
Basic Information
- Insect
- Leucophora obtusa
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_949987735.1
- Location
- OX465297.1:211284826-211304307[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2 6.4e+04 -12.6 15.3 217 261 102 147 13 192 0.46 2 3 4.2e-117 1.3e-112 377.8 26.7 1 299 268 564 268 565 0.94 3 3 0.12 3.9e+03 -1.4 4.0 213 245 587 618 567 639 0.53
Sequence Information
- Coding Sequence
- ATGGATACTTCAAGTGCCGTTGGACGGCGTCGGGTTAATTCACGTGTTAATGCAGAAGATCAAGCATTGGATCAAATAGCTAAAGAGTTGTCAAAAAGAAAGAAAAACACTAATAACAACGGCAATAATACTAATATCAatagcaacaacaacaacgaagTAGCTAACGATGAAATCATCGAGGAGTTGTTTGATTTTAGCGATACTGATTTAAAAGAACTCAGTACAAACGAAGACAACAACAATATCATTAATAATAAGGTGCTAACAAATGAAAATAAAGGCAATGATGAATCCAAGGTGCCTGAAGAGGAAGGTAGAGTGCAACtgcaaaattttgttaatgATAACAAAgaccaacaacaacaacaactggGAGAACTACTAACTGATAACAATGATAAAAACGAAGAACGACACGAGCTAACAGAGACGACAATGACTTCAATTAACGGCGGAAATGAAGATAATAATGAAAATGTTAAcaatcaacaacaacaacaaacagATATAAATGTATCTACAAGTGAAGATTTAATTAATGATAATGTTACTCTGAAAAAAATCACCGATAATGGTAATACAAACATTCCAAATGCTGATACACCGGGATCTGATCAAAATGATAAACTATCTTCTTCAGATATACAGCAAACAAACTATGCAAATTCGCCTGTTACAACAAATAAAGAAAGTAATTACTATGAAGATAATGCTAATGATGACAATGGCATGGGTGATGAAAATGCTGAACCATACGATGAATTTTTAGTTCAATTCCTAGATGAAGCAAATCACATTGCTGAAGCTAGATTAGCTGCCCGACGGCAGGCGAGAGCGGAAGCACGCGAAATACGAATGAGAGAACTGGAACGACAACAAAAGGAACAAGAATCAAATGCTGATCGAGTATTTGATATGCACACAACTGCAACTGGCATAACGCCTTTGTCACACATGCGACTGGGTATCAGTTCACCCACAGTTAGTGGTTTATTAAACTCTACACGAGGCAATTCGATGTCTTCACGGCGTAGTAGTGAGGATTCACTGGAAGAGGAAGGCCGCAGCTTAAGGGATATACGCCATGAATTAAAGGACGTAGAAGAACGGTTTCGTAAGGCCATGATTGCAAACGCCCAGTTGGATAACGATCGTGCCTCACAAACTTATCAAATTCAATTGCTTAAAGATAAGCTAGAAGATATGGAAGAATCTTATTCACAATTACAGCGTGAATGTAAGGAAAAAACACGTGATTGTAATGCGTTGAAACGTTCATTGGACAAATTAAGTGAAGAACTTAAATTGGTTCAGGGTCAGCTCAATGAGCGTGACACACTTATAGTAGAGCAGGGTTTAGTTATTGTGGCAGTTGAAAATGAGGATGGCACTGATGCCAAACGTGCTCTAGTCAGTGTTGAAAATGCACAATTATTGGGTTCGGTACAAGGATCATTAGATGTTCGACTTAAGAAATTTAGCGAAGAGAAACAGCAATTGCAAGCCGAAGTCCAACATTTGCAGGAACAATTCGAAACATATAAAAGTCAAGGCAGGGGACGAGGAAAAGGCAATTCTTCAAATGGTCCTTTAGGTTCAGACGATGATGATTATGAAGCTCAGAGAGAAGCTAACAAAATCATATCGgattataaatataaattacaaaaagCTGAACAAGAAATTGCTAGTCTACAATCGAGTTTAGCACGTTCAGAGACCCAAGTTATACGGTATAAAAGTACAGCTGAGGCTGCCGAAAAAGCTGAATCTGAGCTTAAAATTGAAAGAAGGAAACTACAGAGAGAGaATCGTGAGGCAATGGAAAAACTGGAAGAATTAGAAACATCAAATAATCATCTACTGAAACGATTGGATAAGTTAAAGAATGCTAAGAGCGCTTTGCTCAAGGATCTCTGA
- Protein Sequence
- MDTSSAVGRRRVNSRVNAEDQALDQIAKELSKRKKNTNNNGNNTNINSNNNNEVANDEIIEELFDFSDTDLKELSTNEDNNNIINNKVLTNENKGNDESKVPEEEGRVQLQNFVNDNKDQQQQQLGELLTDNNDKNEERHELTETTMTSINGGNEDNNENVNNQQQQQTDINVSTSEDLINDNVTLKKITDNGNTNIPNADTPGSDQNDKLSSSDIQQTNYANSPVTTNKESNYYEDNANDDNGMGDENAEPYDEFLVQFLDEANHIAEARLAARRQARAEAREIRMRELERQQKEQESNADRVFDMHTTATGITPLSHMRLGISSPTVSGLLNSTRGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNDRASQTYQIQLLKDKLEDMEESYSQLQRECKEKTRDCNALKRSLDKLSEELKLVQGQLNERDTLIVEQGLVIVAVENEDGTDAKRALVSVENAQLLGSVQGSLDVRLKKFSEEKQQLQAEVQHLQEQFETYKSQGRGRGKGNSSNGPLGSDDDDYEAQREANKIISDYKYKLQKAEQEIASLQSSLARSETQVIRYKSTAEAAEKAESELKIERRKLQRENREAMEKLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -