Lvar002201.1
Basic Information
- Insect
- Leucophenga varia
- Gene Symbol
- -
- Assembly
- GCA_018903435.1
- Location
- JAEIFJ010001606.1:830368-832951[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.056 4.3e+02 1.5 0.2 26 42 179 195 171 199 0.81 2 6 0.00039 3 8.4 0.1 21 44 515 538 510 545 0.90 3 6 2.3e-05 0.18 12.3 0.1 21 48 651 677 648 683 0.87 4 6 0.0018 14 6.2 0.3 24 45 681 703 676 707 0.83 5 6 0.57 4.4e+03 -1.7 0.1 36 50 749 763 737 764 0.69 6 6 0.0017 13 6.3 0.3 21 47 763 789 749 793 0.90
Sequence Information
- Coding Sequence
- ATGTTGCCGATTACGCGTGCAACTGTCGATGAGTTCTGTCGTTCGTGTCTGCAGCAGCTGAACTACACAAATGCAGACTTTGAGCCTATGCACGACTTGCAATTGGACATGGATCTGCAGAAATGGTTTCATGCCACGACCACAACGGAAACTCCACGCTTAATGATCTTTAATGATGAGAAGGACATATCAACAAAACAGTTGGAATTATACGATTTACAAAATTATCCGCAACGAATATGTCATTCCTGCTATACGAAGGCAAGCATCTTTAATGAATTCCAGGAGAAGTCAATGTGTGCCGCTGTTGTGCTCAAAGAGATATACGCTGACAAACCAGTCGATGATGAAGGTCTAGCAAAGTTAAAAATGTTTTGCGCTGCCTGTTTGCGTAATTTGAGATCTTCATATAGAGCGAAAAATGCCGGCAATACACATAATGTACTCGAGAATAAACAAGTAAATGATTGGCTATACGATTGTACGGGCGTAAATGTACAAGCGGAGCCACGTGAAGATTATGCGCCCACACATATATGCAATATTTGTTATAAGAAACTGCGTAACTTTGTCGAGTATCGGCGTGTTGCTCATGAATCTGCTGAATATCTGGAAAATGTTCTAGGCAGAGTAGATGTGAAAGATGGCAGCGTAAGCGGAGGCGTTGTAGCTAGTAGTAAAGTAGTTGCTGAAGCACAGAACAACTCGAATGAAAACCATAATGACAACAACACCAACGACGACGACGGAGACGCCGGCGAAACTTTTGATACTGACATTGACGAAAACGTAGATGTAGACGTTGACGTTGATGCTGATGTCGAAACAAACATTGAAATAAGCATACCAAAGACAGAGGTTTGCGTTTCACCAATAATGGTTGTAAACACAGATTGGAAGGTTCTTGACACAGAAGTGGAAGAAAAGTTCAAGGAGGATCCGCTGGATGAGGGTAACAATGATTTTGAATGTGCGTTACTAACTGCTGTTGATGTACTAGTCAAGGAAGAAATTCTGGAACCAGAAATACTATTAGAACAATTTGAAAAGGAAAATACAATGATTGAGGATGACGAAGATGACGACGACAACAACGACGTTAAAGAATCAAAGAGAAATGAGGAGGAAGAGGAGCAGGAACGTAAAGATAATTTGGAACCAAAACAGCTGCGGCAACAAAAGCTTAAAAATCGCACAAAACGTACGAAAGCAAACTATAAAGACTTCAGTGATAATGAATCAATACCCACTTCGGATGCTGCTGATGATGATGATTGGCACAATAATAGCGATAATAGTGATAGTGAAAAGTCATATTTGCGTTCACCACCATACACGAAACGTATTAAATCAATCAGCAGCACACGAACTGCATCATCATCAGATAGAAAAACACGCAAGAACTCAACGACAACGCCCACAAAGAAAACTGCTAAAACAAAACTCAGCCCAAAATGTAAATTAATAAAATGTGAACAGTGCTCAAAGAAATTTCGCAAACAATACATGTACGATGCACATGTGCGCGGCGTACATGAAGGCAGTGATAAACCGTTCCGTTGCGAAATGTGTACACAATGTTTTCGTTCATATAATAATATGCGACGTCATTTCATAGATGCACATGAGCACGCAGCGCTGTTAGCGGAAAGCGATGGTCTTGATGCCGATCCCAATGATCCGAATGCAACAAAGACTGTCAAATGGAGTTGTACCGTTTGCAGTGCTGCATTCGAAACGAAAGGTTTCCTAAGCGATCATATGCTTAAGTCACACAATGAGGTACGTCCGTATAAATGCGATTATTGTTTGCGTGCTTTTCGTCGCAAGGATCATATGGCTGATCACGTTAATGCTGTACATCATGGCATACGCGCATTCAAGTGTGGTTTCTGTGATAAAACCTTTGCGGCACGCAAGACAATGCGTGTACACGAAATGGGGCATACGGGTGAACGTCCGTATACATGTGAAATTTGCCAGAAAACATTTCGACAACCCTCCGATCTTAAAATACACATGGAAAAACATACAACCGATCCAGCGCTGCTCTGTCCAATATGTTATCGCGCTAAAAGTAATGCAGCAGAGCTGCAGGCACACATTGAGCAGCACAATTCGAATGGTTATCAGTGCACAAAGTGCGGCAAAACATTTAAAAAATTATCGCATTTGAACGAACACGATCAGGCGGTACACTTACGTTTACGTCCATTCAAATGCACCTATTGTGATCAGTGTTTCGGTGCGCGTAAAACACGCCGTAATCATGAACTTATACACACAGCAGAGTGGCCGGTGAAGTGTCCTGTCTGCGGCAAGGGCTTTCGTGCAAATACATGTCTGCATAAACATATGCGCTTGCACAAGACAACATGCGGCAAAAGTGAAAAGGCAATAAGGAGCCGGAAACAAACGAAAATAACGCCTATAATCGATTCCTAA
- Protein Sequence
- MLPITRATVDEFCRSCLQQLNYTNADFEPMHDLQLDMDLQKWFHATTTTETPRLMIFNDEKDISTKQLELYDLQNYPQRICHSCYTKASIFNEFQEKSMCAAVVLKEIYADKPVDDEGLAKLKMFCAACLRNLRSSYRAKNAGNTHNVLENKQVNDWLYDCTGVNVQAEPREDYAPTHICNICYKKLRNFVEYRRVAHESAEYLENVLGRVDVKDGSVSGGVVASSKVVAEAQNNSNENHNDNNTNDDDGDAGETFDTDIDENVDVDVDVDADVETNIEISIPKTEVCVSPIMVVNTDWKVLDTEVEEKFKEDPLDEGNNDFECALLTAVDVLVKEEILEPEILLEQFEKENTMIEDDEDDDDNNDVKESKRNEEEEEQERKDNLEPKQLRQQKLKNRTKRTKANYKDFSDNESIPTSDAADDDDWHNNSDNSDSEKSYLRSPPYTKRIKSISSTRTASSSDRKTRKNSTTTPTKKTAKTKLSPKCKLIKCEQCSKKFRKQYMYDAHVRGVHEGSDKPFRCEMCTQCFRSYNNMRRHFIDAHEHAALLAESDGLDADPNDPNATKTVKWSCTVCSAAFETKGFLSDHMLKSHNEVRPYKCDYCLRAFRRKDHMADHVNAVHHGIRAFKCGFCDKTFAARKTMRVHEMGHTGERPYTCEICQKTFRQPSDLKIHMEKHTTDPALLCPICYRAKSNAAELQAHIEQHNSNGYQCTKCGKTFKKLSHLNEHDQAVHLRLRPFKCTYCDQCFGARKTRRNHELIHTAEWPVKCPVCGKGFRANTCLHKHMRLHKTTCGKSEKAIRSRKQTKITPIIDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00892103;
- 90% Identity
- iTF_00892103;
- 80% Identity
- iTF_00892103;