Lvar012728.1
Basic Information
- Insect
- Leucophenga varia
- Gene Symbol
- Aef1
- Assembly
- GCA_018903435.1
- Location
- JAEIFJ010003025.1:3399838-3400629[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0012 8.9 6.9 0.1 21 49 21 49 9 52 0.83 2 4 2.2e-05 0.17 12.4 0.0 21 52 49 80 45 81 0.88 3 4 0.0023 18 5.9 0.1 21 51 77 107 75 108 0.87 4 4 7.2e-05 0.55 10.7 0.1 21 47 105 131 101 138 0.88
Sequence Information
- Coding Sequence
- ATGCACCTTGCGTCGTCTGGAGGTAGTGGTGGCGGCGGCAGTAGAGATCCTAGTGGTAATCCTGAAAAACCATTTCAGTGCAATGTCTGCGATCGAAGGTTTCGACAGCTAAGCACGCTTACAAATCATGTTAAAATACATACAGGCGAGAAGCCTTACAAATGCAACGTTTGTGATAAAACCTTCCGTCAATCGTCAACGCTGACGAATCACATGAAGATACATACCGGTGAAAAACCGTACAATTGCACCTATTGCCCTAAGCATTTCCGTCAGTTAAGCACGTTAGCCAATCATCTCAAGATACATACGGGTGAAAAACCATTTGAATGCGTCGTTTGTAAAAAACAATTCCGCCAGTCTAGCACGCTCAATAATCATATAAAAATACACGTTATGGATAAGGTCTACGTGCCTGTTAAGATAAAAACGGAGGAGGAGGAAGGGTGA
- Protein Sequence
- MHLASSGGSGGGGSRDPSGNPEKPFQCNVCDRRFRQLSTLTNHVKIHTGEKPYKCNVCDKTFRQSSTLTNHMKIHTGEKPYNCTYCPKHFRQLSTLANHLKIHTGEKPFECVVCKKQFRQSSTLNNHIKIHVMDKVYVPVKIKTEEEEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00892129;
- 90% Identity
- iTF_00892129;
- 80% Identity
- iTF_00892129;