Lvar006410.1
Basic Information
- Insect
- Leucophenga varia
- Gene Symbol
- ZNF217
- Assembly
- GCA_018903435.1
- Location
- JAEIFJ010001211.1:190742-193821[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0012 0.098 13.5 4.7 2 23 202 223 201 224 0.94 2 13 1.9e-06 0.00015 22.3 2.3 1 23 232 255 232 255 0.96 3 13 0.094 7.5 7.6 0.8 2 23 292 313 291 313 0.95 4 13 0.027 2.2 9.3 0.6 1 23 406 428 406 428 0.93 5 13 0.0065 0.52 11.2 4.5 3 23 437 458 436 458 0.97 6 13 0.00037 0.03 15.1 1.6 2 23 466 487 465 487 0.96 7 13 0.009 0.71 10.8 0.0 3 21 515 533 513 534 0.93 8 13 0.0032 0.26 12.2 3.3 1 23 586 609 586 609 0.97 9 13 0.0046 0.36 11.7 0.9 2 23 647 669 646 669 0.95 10 13 3.3e-05 0.0026 18.4 0.8 1 23 723 745 723 745 0.96 11 13 1.2 93 4.1 5.1 1 23 751 773 751 773 0.98 12 13 3.1e-06 0.00025 21.7 2.0 1 23 779 801 779 801 0.97 13 13 2.1e-05 0.0017 19.1 2.7 1 23 807 829 807 829 0.98
Sequence Information
- Coding Sequence
- ATGCCAGACAAAACGATTTGCCTCACTTGTGATACAAGTGCAGCCACCGAGCTGTACGAGCTGAAATCGATGTACACGAAAAAGTATCCTGGAAAGCAGTTACTAGAGCTACTAAAGGAATTAATTGAATTTGAACGTACGAGGCACAACTGCCGCAGCATCTTTGCGGCGATTGCATGCAAAAAACTAAACAATGCGTACGAATTTGTGATGCAGGCTCGGGAAGCCTACAAACGATTGCTGGAGAGATTCAAACCGGAATTGAAGTTAGACGTGGAAAACGCGCCACCATTGGAACAATTTGTTGCAGTCAAACTAGAGCCGGCCGGCGATGAAATGACACCCGTTGAATTTGCTGAAACTCTTTTGAAGGAGCACGAATCAGATAAGGATTGCGATGACGATATGCAACAAGATTATGATATATTTGATAAAGGAATAACGCATTTAAAACAAACCGACATGGATATTGATATTAGTAATGATGAAGATTTCAACAACTCATCTAGTGATGACAATGACGATGATGAAGACGATGAACCGCTGCTAAAGCGTAAAATTAAATTACAAAAAGCTAAACAACAGCAAAAGCAAAGTACTTTATCTTGTAATCAATGTAGTAAAACGTTCCGTTTACGACGCAGCTTAAATGCGCACAAACAGAAACATCATCCAAAAAGCAACGACGAGTCACATGCATGTCCACAGTGTAAACGTAAATTTAGTCGTAAGGATAGTTTGCAAGTGCACCTAAAAACAATACATGCGCCTAATGATGGTACGCCACAGCAACATGTTCCTACGATATCGGAACGAAAGAAAGCCAAAGAACTTGATTTGAATCTCTGTAAGCCACACGGTTGCAAGTTGATACAATGCATGATTTGTTTGCAACACTTTGGAAAAATATCTGAATTACGAAACCATTTGACTGAACATCCCGAAATTGATATATTTGCGAGACGTACGGATACGTTGCAGGAGATTGCTGAATCGTTCTATCCTGATATGAAGGAAGATGTTACGGAATCAGCATTGTTGGCACGTTTACGCAAAGATCTTAAAGCGGAAAAATATCAACTCTTTGAGCATCAACGTGAAAAACATGCCTGGGAAGAGGCACAGCATATCTGCCGCCGTTGTGATGCTCGTTTCTTAAGCAAGCAAGTGTTGGATCATCATTATGAGTCACAATGTCGTAACTCGCAAAAGCGTTTTCTGTGCAACAGATGTCCACTACGTTTTCGGTGGAAACAGAATCTAAAGGCACATTACGCGGAACACAAAAATATGGTAAAAGCAAATATATGCGAAAAGTGCAATCATTCCTTTATGGACAAGAAGTCTTTGTCAACACATTTGCATACGGTTCATACCGACGCCTCTAATCTGCTGCCATGCAAATGGTGCAATCGTTTATTCTATCGTAATGAAAATTTGTTAAAACATTTTAAACGTCACGGTTTGAGAGAGCGTGATTTACCACTGGCCGAAGTGCTACTGAAAGCTACAATAAATCCAAACGGTGCTAAACGCATTATTTGCAAGGTTTGTGAACTAAAATTCGAACGTATTGCTGATTTAAAAGCGCATATACTCATGGAGCTCAAGTTAAATTTGAATGAACATCATAGACAGCATGAGTCACTACCAAATTATTCAATTGTAAACGAGGCTGGCTTTGAGTTACACTTGGACGATTCAGAAACGGATAATGATGAAACGACGGCGACAAGTATACTACCCAGCATGCCGTATAAATGTGAAATTTGTCAAGTGCAATGTCGTCGACGCTATGAAATGTTTCAACATCAGCGTGCAATGCATGCATTCGAGCCTTTACCGCATAACTGCACCAGTTGTATTTTCAAAACAGTCTGCAAAAACATACTAGAGCACCACGAGCGAACGCATTGTCAAAATAAAGAAAAGCAACTTAACTGTAAGCATTGCAGCTACAAGTTTATATGGCCAGAAAATTTGGAACAACATCAACAAATTATGCATGCTGATGTTAAAAATGCGACCACTGGTAGCATTGCTGCTGTAAATGGTGCAAAGCCTGCAGGGTCAATACAAATGGAACATAAATCATCAACGACAACAAACCTTTTAAACTTGAAAATGGCGAGGCTAATAAAAAAAAAAAAATTAGCCGTGCTCAAATATTTATGCTCACATTGTGGCAAAGAATCAACTTCACCATATGCTTTGCTATTGCATATAAGACGTCATACTGGCGAAAAACCATTTAAATGTGATATTTGTCAAATGGGATTTTTACGGCATTGCGAAATGTTACTGCATCGCAGAAAGCATACTGGTGAGAAGCCGTATCATTGTACTGTTTGTGGCAAAGATTTTGCACGTTCCGATAAATTGAAGCGTCATACGCTTATACACAGCGGCATGAAACCGTTCAAATGTAAACTTTGCGATCAAAGTTATCGCTATTCGAAAGATCTCACAATGCACATGCAACAGCATACAGATGATACAACTACATAA
- Protein Sequence
- MPDKTICLTCDTSAATELYELKSMYTKKYPGKQLLELLKELIEFERTRHNCRSIFAAIACKKLNNAYEFVMQAREAYKRLLERFKPELKLDVENAPPLEQFVAVKLEPAGDEMTPVEFAETLLKEHESDKDCDDDMQQDYDIFDKGITHLKQTDMDIDISNDEDFNNSSSDDNDDDEDDEPLLKRKIKLQKAKQQQKQSTLSCNQCSKTFRLRRSLNAHKQKHHPKSNDESHACPQCKRKFSRKDSLQVHLKTIHAPNDGTPQQHVPTISERKKAKELDLNLCKPHGCKLIQCMICLQHFGKISELRNHLTEHPEIDIFARRTDTLQEIAESFYPDMKEDVTESALLARLRKDLKAEKYQLFEHQREKHAWEEAQHICRRCDARFLSKQVLDHHYESQCRNSQKRFLCNRCPLRFRWKQNLKAHYAEHKNMVKANICEKCNHSFMDKKSLSTHLHTVHTDASNLLPCKWCNRLFYRNENLLKHFKRHGLRERDLPLAEVLLKATINPNGAKRIICKVCELKFERIADLKAHILMELKLNLNEHHRQHESLPNYSIVNEAGFELHLDDSETDNDETTATSILPSMPYKCEICQVQCRRRYEMFQHQRAMHAFEPLPHNCTSCIFKTVCKNILEHHERTHCQNKEKQLNCKHCSYKFIWPENLEQHQQIMHADVKNATTGSIAAVNGAKPAGSIQMEHKSSTTTNLLNLKMARLIKKKKLAVLKYLCSHCGKESTSPYALLLHIRRHTGEKPFKCDICQMGFLRHCEMLLHRRKHTGEKPYHCTVCGKDFARSDKLKRHTLIHSGMKPFKCKLCDQSYRYSKDLTMHMQQHTDDTTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00892079;
- 90% Identity
- -
- 80% Identity
- -