Basic Information

Insect: Leucophenga varia
Gene Symbol: -
Assembly: GCA_018903435.1
Location: JAEIFJ010001211.1:198951-202132[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0015 0.12 13.3 4.7 2 23 235 256 234 257 0.94

2 16 2.3e-06 0.00018 22.1 2.3 1 23 265 288 265 288 0.96

3 16 0.11 8.8 7.3 0.8 2 23 325 346 324 346 0.95

4 16 0.029 2.3 9.2 2.7 1 23 427 451 427 451 0.92

5 16 0.032 2.6 9.0 0.6 1 23 488 510 488 510 0.93

6 16 0.00012 0.0095 16.7 3.5 3 23 519 540 518 540 0.97

7 16 0.0012 0.098 13.5 1.6 2 23 548 569 547 569 0.96

8 16 0.011 0.84 10.6 0.0 3 21 597 615 595 616 0.93

9 16 0.0038 0.31 11.9 3.3 1 23 668 691 668 691 0.97

10 16 0.0024 0.19 12.6 1.4 1 23 728 751 728 751 0.96

11 16 0.00016 0.013 16.3 2.8 2 23 788 810 787 810 0.94

12 16 0.048 3.8 8.5 0.8 1 23 828 850 828 850 0.95

13 16 0.00036 0.028 15.2 1.5 1 23 856 878 856 878 0.99

14 16 3.7e-06 0.00029 21.5 2.0 1 23 884 906 884 906 0.97

15 16 4.5e-06 0.00036 21.2 1.7 1 23 912 934 912 934 0.98

16 16 0.00063 0.05 14.4 0.1 1 22 940 961 940 964 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0015	0.12	13.3	4.7	2	23	235	256	234	257	0.94
2	16	2.3e-06	0.00018	22.1	2.3	1	23	265	288	265	288	0.96
3	16	0.11	8.8	7.3	0.8	2	23	325	346	324	346	0.95
4	16	0.029	2.3	9.2	2.7	1	23	427	451	427	451	0.92
5	16	0.032	2.6	9.0	0.6	1	23	488	510	488	510	0.93
6	16	0.00012	0.0095	16.7	3.5	3	23	519	540	518	540	0.97
7	16	0.0012	0.098	13.5	1.6	2	23	548	569	547	569	0.96
8	16	0.011	0.84	10.6	0.0	3	21	597	615	595	616	0.93
9	16	0.0038	0.31	11.9	3.3	1	23	668	691	668	691	0.97
10	16	0.0024	0.19	12.6	1.4	1	23	728	751	728	751	0.96
11	16	0.00016	0.013	16.3	2.8	2	23	788	810	787	810	0.94
12	16	0.048	3.8	8.5	0.8	1	23	828	850	828	850	0.95
13	16	0.00036	0.028	15.2	1.5	1	23	856	878	856	878	0.99
14	16	3.7e-06	0.00029	21.5	2.0	1	23	884	906	884	906	0.97
15	16	4.5e-06	0.00036	21.2	1.7	1	23	912	934	912	934	0.98
16	16	0.00063	0.05	14.4	0.1	1	22	940	961	940	964	0.90

Sequence Information

Coding Sequence: ATGCCAGACAAAACGATTTGCCTCACTTGTGATACAAGTGCAGCCACCGAGCTGTACGAGCTGAAATCGATGTACACGAAAAAGTATCCTGGAAAGCAGTTACTAGAGCTACTAAAGGAATTAATTGAATTTGAACGTACGAGGCACAATTGCCGCAGCATCTTTGCGGCGATTGCATGCAAAAAACTAAACAATGCGTACGAATTTGTGATGCAGGCTCGGGAAGCCTACAAACGATTGCTGGAGAGATTCAAACCGGAATTAAAGTTAGACGTGGAAAACGCGCCACCATTGGAACAATTTGTTGCAGTCAAACTAGAGCCGGCCGGCGATGAAATGACACCCGTTGAATTTGCTGAAACTCTTTTGAAGGAGCACGAATCAGATAAGGATTGCGATGACGATATGCAACAAGATTATGATATATTTGATAAAGGAATAAGTGAGAGCAGTGCTAATGAAAAGGAACAAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAACGCTGATGAAACAAAGAAAACGGAAAGCGCATTTAAAACAAACCGACATGGATATTGATATTAGTAATGATGAAGATTTCAACAACTCATCTAGTGATGACAATGACGATGATGAAGACGATGAACCGCTGCTAAAGCGTAAAATTAAATTACAAAAAGCTAAACAACAGCAAAAGCAAAGCACTTTATCTTGTAATCAATGTAGTAAAACGTTCCGTTTACGACGCAGCTTAAATGCGCACAAACAGAAACATCATCCAAAAAGCAACGACGAGTCACATGCATGTCCACAGTGTAAACGTAAATTTAGTCGTAAGGATAGTTTGCAAGTGCACCTGAAAACAATACATGCGCCTAATGATGGTACGCCACAGCAACATGTACCTACGATATCGGAACGCAAGAAAGCCAAAGAACTTGATTTGAATCTCTGTAAGCCACACGGTTGCAAGTTGATACAATGCATGATTTGTTTGCAACACTTTGGAAAAATATCTGAATTACGAAACCATTTGACTGAACATCCCGAAATTGATATATTTGCGAGACGTACGGATACGTTGCAGGAGATTGCTGAATCGTTCTATCCTGATATGAAGGAAGATGTTACGGAATCAGCATTGTTGGCACGTTTACGCAAAGATCTTAAAGCGGAAAAGTATTTTTATTTTTATTCCATAACAAATCAAGCTGGCTACGAGTTAAGACTAGAAAGTTCAGATACAGATGGCGATGATGAAAATATGGACAGGAGAAAATGTTTCTACGCTTGCGATTTGTGCACAAAAACAAAATTTCGTCGTAGATATCAACTCTTTGAACATCAACGTGAAAAACATGCCTGGGAAGAGGCACAGCATATCTGCCGCCGTTGTGATGCTCGTTTCTTAAGCAAGCAAGTGTTGGATCATCATTATGAGTCACAATGTCGTAACTCGCAAAAGCGTTTTCTGTGCAACAGATGTCCACTACGTTTTCGGTGGAAACAGAATCTAAAGGCACATTACGCGGAACACAAAAATATGGTACAAACAAATATATGCGAAAAGTGCAATCGTTCTTTTAAGGACAAGAAGTCTTTATCTACACATTTGCATACGGTGCATACCGATGCATCTAATCTGCTGCCATGCAAATGGTGCAATCGTTTATTCTATCGTTATGAAAATTTGTTAAAACATTTTAAACGTCACGGTTTGAGAGAGCGTGATTTACCACTGGCCGAAGTGCTACTGAAAGCTACAATAAATCCGAACGGTGCTAAACGCATTATTTGCAAGGTTTGTGAACTAAAATTCGAACGTATTGCGGATTTAAAAGCGCATATACTCATGGAGCTCAAGTTAAATTTGAATGAACATCATAGACAGCATGAGTCATTACCAAATTACTCAATTGTAAACGAGGCTGGCTTTGAGTTACACTTGGACGATTCGGAAACGGATAATGATGAAACGACGGCGACAAGTACACTACCCAGCATGCCGTATAAATGTGAAATTTGTCAAGTGCAATGTCGTCGACGCTATGAAATGTTTCAACATCAGCGTGCAATGCATGCATTCGAGCCTTTACCGCATAACTGTGCCAGTTGTATTTTCAAAACAGTCTGCAAAAACATACTAGAGCACCACGAGCGAACGCATTGTCAAAATAAAGAAAAGCAATTTAACTGTAAGCATTGCAGCTACAAGTTTATATGGCCAGAAAATTTGGAACAACATCAACAAATAATGCATGCTGATGTTAAGAATGCGACTCCTGGTAGCATTGCTACTGTAAATGGTGCAACGCCTGCAGAATCAATGCAAACGGAACATAAATCAGCAACAGCAACGGAACTATTAAACTGTCCACATTGTGATCGCACTTATATGCATCAATCGCGTCTAAATAATCACATACGCGATGTGCATGGTGAAGGAAGCGAGGCTAATAAAAAGAAGAAAAAAGAATCAGAACGTAAATTTCTCTGCTCGCATTGTGGCAAAGAAGAACCATCAGCTTCGCGTTTGCTTACACATGTACGAAGACATACAGGTGAAAGACCTTTTAAATGCGATATGTGCGAAATGGCATTTGCACGACATGTTGAGATGACGATACATCGTAGAAAACATACCGGAGAAAAGCCATATCATTGCACAGTTTGTGGCAAAGACTTTGCACGTTCCGACAAACTTAAGCGTCACACGCTCATCCATAGCGGGCTGAAACCATACAAGTGTACGTTATGCGAAAAAAGCTATCGTCAAGCTAAAGATCTCAAGTTGCATATGCAACAACATACCGGTGAAACACCATTTGAATGCACCACATGCGGCGAGCGTTTTATAGAACGTGTTGCACTGGAGAAACATCGAATAATGCGTGGTCACTTTGATGAGACACAGTAA
Protein Sequence: MPDKTICLTCDTSAATELYELKSMYTKKYPGKQLLELLKELIEFERTRHNCRSIFAAIACKKLNNAYEFVMQAREAYKRLLERFKPELKLDVENAPPLEQFVAVKLEPAGDEMTPVEFAETLLKEHESDKDCDDDMQQDYDIFDKGISESSANEKEQDXXXXXXXXXXXXLTLMKQRKRKAHLKQTDMDIDISNDEDFNNSSSDDNDDDEDDEPLLKRKIKLQKAKQQQKQSTLSCNQCSKTFRLRRSLNAHKQKHHPKSNDESHACPQCKRKFSRKDSLQVHLKTIHAPNDGTPQQHVPTISERKKAKELDLNLCKPHGCKLIQCMICLQHFGKISELRNHLTEHPEIDIFARRTDTLQEIAESFYPDMKEDVTESALLARLRKDLKAEKYFYFYSITNQAGYELRLESSDTDGDDENMDRRKCFYACDLCTKTKFRRRYQLFEHQREKHAWEEAQHICRRCDARFLSKQVLDHHYESQCRNSQKRFLCNRCPLRFRWKQNLKAHYAEHKNMVQTNICEKCNRSFKDKKSLSTHLHTVHTDASNLLPCKWCNRLFYRYENLLKHFKRHGLRERDLPLAEVLLKATINPNGAKRIICKVCELKFERIADLKAHILMELKLNLNEHHRQHESLPNYSIVNEAGFELHLDDSETDNDETTATSTLPSMPYKCEICQVQCRRRYEMFQHQRAMHAFEPLPHNCASCIFKTVCKNILEHHERTHCQNKEKQFNCKHCSYKFIWPENLEQHQQIMHADVKNATPGSIATVNGATPAESMQTEHKSATATELLNCPHCDRTYMHQSRLNNHIRDVHGEGSEANKKKKKESERKFLCSHCGKEEPSASRLLTHVRRHTGERPFKCDMCEMAFARHVEMTIHRRKHTGEKPYHCTVCGKDFARSDKLKRHTLIHSGLKPYKCTLCEKSYRQAKDLKLHMQQHTGETPFECTTCGERFIERVALEKHRIMRGHFDETQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00892142;
90% Identity: -
80% Identity: -