Lvar004394.1
Basic Information
- Insect
- Leucophenga varia
- Gene Symbol
- Hr39
- Assembly
- GCA_018903435.1
- Location
- JAEIFJ010001237.1:521203-528380[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.8 2.1e+04 -5.2 12.9 41 160 142 261 131 285 0.43 2 3 3.5e-10 4e-06 26.8 0.0 1 31 439 469 439 485 0.87 3 3 1.6e-78 1.9e-74 251.9 0.1 195 392 509 696 490 697 0.94
Sequence Information
- Coding Sequence
- ATGTCTACAATTAAAGCTGAAACAGTGAATACAGTGACCACCACAACGCCAGGAGTTGATGAACTGGCAACGGCTACGGCAACCACACCAAATGGTAATATTGTACCAGTAATAGCACATAGCACAGCGGCGCATACATATAATGGCTCGAGCGTTGGTGGCATTGGTGGTGGCAGTGGCATACGTATACCACTTGCATGTACGGCAACAACAACGGCGTCAGCTGCCGCTGTTACAAATACAAAAGCTGAAGATTCCGATTCTGAAGCAGAACTGACCAATATTGAAAATTTAAAAGTAACAAGACGTGCAACAGCAAGCAGCACTGGTGGTGGTGGTAATGGTTTTGTGGTGGTGTTGTTGGTTAATGGTGCTGACTTGGGCGTTGGAGTTGGTGTTACGGTAATCAAAAGTGAAGCGACAAGTAGTCAACAAATGCAACCGATCAAAACAGAACTCGAACAGATCTCGGCTAGTATGTATAATACAAGTATGGTAACAACGGCAACACCGATACCATTGGCCAAATTGAAATTGGCACCAACGCAAAGTGATCCGATTAATCTCAAATATGAACCAAGCCAGACGACGACTACTGATACAATTGCGCGCAATACAAAATGTAATAGCCAATTGCCATTGCCTGCCAATCCTAGTCCTGATTCCGCCATACATTCCGTCTATACGCATAGCTCGCCATCACAATCACCGTTGACATCACGTCATGCACCGTATACACCGTCTTTAAGTCGTAATAATAGTGATGCATCGCATAGTTCTTGCTATTCATATAGTTCCGAATTTAGTCCGACACATTCACCAATACAAGCGCGACATGCACCACCGGCGGGCGCTATCTATCCGGGTAGTTTTAATGGTGCACATCATCATAGTATGCTATATCGTCCACTTAATATTGAACCTAATGCTAGTAGTACTAGCGGTGTTGGTGGTGTTGGTTGTGCTAAGCAGGAGGCACAAAATCTAAGCATGGATGCAAATATTGCAACATCATCTTCATCATTTGATGGTGGTGGCGGTGGTGGATCTTCCAGTTTGCCAGCATCACCGGCAGGCATATCACGGCAACAACTCATTAATTCGCCATGTCCCATATGTGGTGATAAAATTTCGGGCTTTCATTATGGCATATTCTCGTGTGAATCGTGTAAGGGCTTCTTTAAGCGCACCGTACAGAATCGTAAGAATTACGTTTGCGTACGTGGCGGTCCATGTCAGGTGAGCATTTCAACGCGTAAGAAATGTCCGGCATGTCGTTTCGAAAAGTGTTTGCAGAAAGGCATGAAATTAGAGGCAATACGTGAAGATCGTACACGTGGTGGACGTTCGACGTATCAATGCTCATATACGCTACCCAATTCAATGCTCAGTCCATTGTTAACGGAATTGGCGCGCTTAAATCAACCCATGCAAACTACATCGTCCGCTGCATCTGGTAGTGCAACAAGTGGCGGCAGCGCTGCTGCTATGACCAATCCACTGCTGGCCAGTGCCGGTCTTGGTTCGAATGGTGAAAATGCTAATCCGGATTTAATTGCGCATCTTTGTAATGTTGCCGATCATAGACTGTACAAGATTGTCAAATGGTGTAAGAGTTTGCCATTGTTCAAGCACATATCGATTGACGATCAAATCTGCCTGCTCATTAATTCCTGGTGTGAACTTTTACTCTTTTCCTGCTGTTTTCGTTCAATCGATACGCCCGGTGAGATTAAAATGTCACAAGGCAAAAAGATAACATTAACGCATGCCAAGTCACATGGACTGCAGACATGCATCGAACGTATGCTTAATCTGACAGATCATTTGAGACGTTTACGCGTTGATCGCTATGAATATGTTGCCATGAAAGTCATAGTACTGCTGCAATCGGATACCACCGAATTGCAGGAGCCAGTCAAAGTGCGCGAATGTCAAGAGAAGGCATTGCAAAGTCTACAGGAATACACACATGCACATTATCCCGATACGCCGTCCAAATTTGGTGAGCTGCTATTACGTATACCCGATCTGCAGCGCACATGTCAGCTTGGCAAAGAAATGTTAACCATAAAATCACGTGAAGGCGCTTAA
- Protein Sequence
- MSTIKAETVNTVTTTTPGVDELATATATTPNGNIVPVIAHSTAAHTYNGSSVGGIGGGSGIRIPLACTATTTASAAAVTNTKAEDSDSEAELTNIENLKVTRRATASSTGGGGNGFVVVLLVNGADLGVGVGVTVIKSEATSSQQMQPIKTELEQISASMYNTSMVTTATPIPLAKLKLAPTQSDPINLKYEPSQTTTTDTIARNTKCNSQLPLPANPSPDSAIHSVYTHSSPSQSPLTSRHAPYTPSLSRNNSDASHSSCYSYSSEFSPTHSPIQARHAPPAGAIYPGSFNGAHHHSMLYRPLNIEPNASSTSGVGGVGCAKQEAQNLSMDANIATSSSSFDGGGGGGSSSLPASPAGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCVRGGPCQVSISTRKKCPACRFEKCLQKGMKLEAIREDRTRGGRSTYQCSYTLPNSMLSPLLTELARLNQPMQTTSSAASGSATSGGSAAAMTNPLLASAGLGSNGENANPDLIAHLCNVADHRLYKIVKWCKSLPLFKHISIDDQICLLINSWCELLLFSCCFRSIDTPGEIKMSQGKKITLTHAKSHGLQTCIERMLNLTDHLRRLRVDRYEYVAMKVIVLLQSDTTELQEPVKVRECQEKALQSLQEYTHAHYPDTPSKFGELLLRIPDLQRTCQLGKEMLTIKSREGA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00891937;
- 90% Identity
- iTF_00891937;
- 80% Identity
- iTF_00891937;