Lvar019640.1
Basic Information
- Insect
- Leucophenga varia
- Gene Symbol
- lrrfip2
- Assembly
- GCA_018903435.1
- Location
- JAEIFJ010002131.1:437292-441621[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.095 2.2e+03 -2.0 0.3 24 55 31 63 13 117 0.59 2 4 0.15 3.4e+03 -2.6 1.5 26 49 145 170 138 190 0.45 3 4 5.9e-115 1.4e-110 369.7 25.9 1 299 290 591 290 592 0.93 4 4 0.033 7.6e+02 -0.5 3.7 210 249 611 649 595 673 0.51
Sequence Information
- Coding Sequence
- ATGTTAAAAGCTACAAAGAAAAAAATTTCAACAAAACGCGGCAAAAGTGCAGCAAAAGAAACAGCAAAGTCGACAGCAAATGGAACTGCGGAGAAAAAAGCTAAAGAGGAAAATAATAATACGAAAAACAACGGCGTAAATAAAACTTTAAAGATAAATAATACAAATGAACCTGAAATTTTAAAAACTGCAACCGCTTCTACAATATCGAACAGCGATGAAGTCATCGAAGAATTTGATTTTAGCGATAGTGACCTGCGTGTGCTTAGCGACGACGATGAAGCAGCGCTAGCGGCAGCAGCAGCCGTAGCAACTGCAAAAGGGGAACACCAGCTAATATCAGAGAAGAATGCAATTGACATAGAAAGCGGCGGCAACGATAACAACAACGATAAAGAAACCAAGCCGACAACAGCAGAAGCAGAAGGAGTGCAGCAAAAGCAGCAGCAGAACAACACAAATACAGAAAATGATAATAAAGACGAAGACGAAGAAGATACAAATGAAGAATGTGCTATAATTAATGTTTCCTCAGCTGCTGTCACTGACAACACTGACAACGAAGAAGCTGAAGCTATTTGTGTCGTTGCGAAAACAAGACTTAAAGAAAAAACACCTCCAGCTAATCTTGTTCTCAACGATACAACGATTACAGCTGCAACAGCGGAATTGCCATATTGTCCGATAACACCAAGATGTGTAGTGGACACAAAAGATAATGAATTTGATAATGATCCATTAAGTACGGATAATTTAAGTCAACAACAGACAACAACAATAAAACGACGTAATACAACCGGCACAACAGAAGATGATGAAAATGATGAGTATTATGATGAAGAACAACCTGAGGAAGATGAATTGCTTGCCGAAGCACGTTTAGCAGCGCGACGACAAGCACGCGCAGAAGCACGTGAAATTCGTATGCGTGAATTGGAAAGACAACAGAAGGAGCAAGAACAGAATGCAGATCGTGTTTTTGATATGCATAATACGACCGGAACAAGTGGCGATGCGCTAGCGCGAACACGCTTAACAGGTGGCGTTGTGCCTGCAGTTGGTAGTCTATTAAATACAACAACAACACGTGTTGTTAGTGCCAGTTCAATGTCATCGCGACGAAGTAGCGAAGATTCACTGGAAGAAGAAGGTCGAAGTTTGAGGGACATTAGACACGAATTAAAAGATGTTGAAGAACGGTTTCGCAAAGCGATGATCGCCAATGCCCAGCTGGATAATGACCGCGCCTCACAAACGTTCGAAGTTAAACTGCTTAAGGACAAAATTGAAACAATGCAAGAATCTTATGCGCAACTTGAACGTGAATTTAAAGAGAAATCACGCGATTATAACGCGCTAAAGCGAAATCTGGACAGATTAACGCTTGAGCTGAAATTGGTAGAGGGTCAACTGAACGAAAGGGATACACTTATTGCAGAACAGGGTCTAGTGATTGTTGCCGTCGAGAATGCCGACGGTACAGATGCCAAGCGTGCTCTAGTCAGCGTAGAAAATGCGAATGTACTGGCCTCAGTGCAGGGTTCGTTAGATGTGCGACTTAAAAAGTTCAATGAAGAGAAGCAACAACTCGTCAGTGAAGTACAGAAACTGCAAGTGCAACTTGATGCCTATAAAAACGAGGGTAAAGGACGTGGTGGCAATTCATTAAATGGTCCTTTGGGTTCTGATGAGGATTATGAGGCTCAAAGAGAAGCAAATAAAATCATATCAGACTATAAATATAAATTACAAAAGGCTGAACAGGAAATCGCTAGTCTGCAGGCGAGCTTAGCACGTTCAGAAACGCAAGTAATAAGATATAAGAGTACAGCGGAAGCGGCCGAAAAAGCTGAAGCTGAATTAAAAGTCGAACGCCGGAAACTGCAAAGAGAGAATCGTGAAGCTATGGAACGCCTTGAAGAGCTTGAAACATCAAATAATCACCTGTTAAAACGTTTGGATAAATTAAAGAATGCCAAGAGCGCTCAAGCAAATGGTAGCACTGATATACCATTAAAAAATGGGCATAACTAA
- Protein Sequence
- MLKATKKKISTKRGKSAAKETAKSTANGTAEKKAKEENNNTKNNGVNKTLKINNTNEPEILKTATASTISNSDEVIEEFDFSDSDLRVLSDDDEAALAAAAAVATAKGEHQLISEKNAIDIESGGNDNNNDKETKPTTAEAEGVQQKQQQNNTNTENDNKDEDEEDTNEECAIINVSSAAVTDNTDNEEAEAICVVAKTRLKEKTPPANLVLNDTTITAATAELPYCPITPRCVVDTKDNEFDNDPLSTDNLSQQQTTTIKRRNTTGTTEDDENDEYYDEEQPEEDELLAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMHNTTGTSGDALARTRLTGGVVPAVGSLLNTTTTRVVSASSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNDRASQTFEVKLLKDKIETMQESYAQLEREFKEKSRDYNALKRNLDRLTLELKLVEGQLNERDTLIAEQGLVIVAVENADGTDAKRALVSVENANVLASVQGSLDVRLKKFNEEKQQLVSEVQKLQVQLDAYKNEGKGRGGNSLNGPLGSDEDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKVERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSAQANGSTDIPLKNGHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -