Lmon004642.1
Basic Information
- Insect
- Leucophenga montana
- Gene Symbol
- -
- Assembly
- GCA_035044765.1
- Location
- JAWNNQ010000617.1:83046-86568[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.035 3.8e+02 1.6 0.2 26 42 176 192 167 196 0.81 2 6 0.0011 12 6.4 0.0 21 44 497 520 492 528 0.88 3 6 1.5e-05 0.16 12.4 0.1 21 48 629 655 626 661 0.87 4 6 0.00015 1.6 9.2 0.3 26 45 662 681 655 685 0.89 5 6 0.32 3.5e+03 -1.5 0.0 37 51 728 742 716 745 0.79 6 6 0.016 1.8e+02 2.6 0.4 23 44 743 764 726 769 0.85
Sequence Information
- Coding Sequence
- atgttGCCGATTACGCGTGCAACCGTTGACGAGTTTTGTCGTTCCTGCCTGCAGCAGCTGAACTATACAAACGCAGACTTTGAGCCCATGCACGATCTGCAATTGGACATGGATCTGCGGAAGTGGTTCCATGCCACGACCACTTCAACGCCGAGCTTAATGATATTCAATAAAGAGAAACCGTCTAATCAACTAGAGTTATTCGATTTACAAACGTATCCGCAAAGGATATGCCATTCCTGCTACACGAAGGCCAGCATCTTCAATGAGTTCCAGGAGAAGTCGATGTGTGCAGCAGTTGTGCTGCAGGAGGTGTATGTCGACAAGCCGGTGGACGATGAAGGCCTTGCAAAACTGAAAATGTTTTGCGCATCCTGTTTACGCAATTTGAGATCTTCGTATAGAGCTAAAAACGCCGGCAATACACATAATCTGGTGgagaataaacaaataaatgattgGTTGTACGATTGTACGGGCGTCAATGTGCAGGCTGAGCCACGCGAAGAATATGCACCATCGCATATATGCAATATTTGCTACAAGAAACTGCGTAACTTTGTCGAGTATCGACGTGTAGCGCATGAATCTGCTGAATATCTCGAAAATGTGTTGGGCAGAGTAGAAGTCGGCGTAGTCGGTGGGGATGTTGAACAAAACTTGGTGgcaaacgacaacaacaacaccaccgaCGCTGACGCCGCCGACGATGACAACGAAACAGTTGACATAGACGCTGACGTGGTGCTCACCAATAAAGTAAGCGTACCAAAGACAGAAGTTTGCGTTTCACCAATAATGGTAGTTAACGCAAATTGGAAGCTAATCGATACTGAAGTGGAAGAAAAGCTCAAGGAAGATCCACTGGATGAGTGTAATAATGATTACGAATGTGCATTACTAACCGCTGTTGATGTGCTAGTCAAAGAAGAAGTACTAGAACCAGAAGTGCTATTGGAGCAATTTGTAAAGGAAGATTATGTAGATGAGAAGGAGCAAGACGAAGCAGAGCAGAAGGTACACACAGCTGAGTTGAAGCCAGTTGATGCAGTTTATAAGAGTGACGAAAATGTAACGAAGAAAGATGTTGAACCGTTGCACAAGCGCGAACCAAAGCAATTGCGTAGGCAGAAGACTAAATTAACTTCAAAACGTGCTTATGACACTAGCGACGATGAGGAGTCAATAGCATCGCCGGCCTCAGCACTTGATGAATGGCGGAATGGTAGTGATAGTAGTGATAGCGCAAGTCGTAGTGAAAAGTCTTCAGTTGCGTCCTCACCACCAGCTAAACGCATTAAAtctgcagcaacaaaaactacatTAGTTACAAAACCGCATAAATTGCTGACAAGCAGCAATAAACGTAAAGCGGGTAGTGGCAAAAAATCCGGCCCAAAATGTAAGCTAATACAATGTGAACAGTGCTCAAAGAAATTCCGTAAGCGCTACATGTATGATGCACATGTGCGCGGTGTACACGAGGGCAGCGATACACCGTTTATGTGCGAAATGTGTCCACAAAGTTTTCGCTCGTACAACAATATGCGTCGTCACTACATTGAAGCACACGAGCATGCAACAAGGCTGGCGGCAAGCGATGCCGACGACGACCCGGATGCACCAAAGACCACCAAGTGGAGTTGCACAGTCTGCAGTGCAGCATTTGAATCGAAAGGATTTCTCAGCGATCACATGCTTAAATCGCACGCCGAAGTGCGTCAGTACAAGTGTGATTACTGTTCGCGTGCTTTTCGACGTAAGGATCATATGGGCGATCACATAAATGCCGTACACCATGGCATACGTGCGTTCAAGTGTGGTTTCTGTGATAAAACTTTTGCTGCACGAAAAACAATGCGCGTACATGAAATGGGTCATACGGGCGAACGTCCGTATACATGCGAAATCTGCAACAAAACGTTCCGACAGCCCTCCGATCTAAAGATACACATGGAAAAACATACAACCGATCCGTCGTTGCTGTGTCCCATTTGCTATCGTGCCAAACGTAATGCAGCGGAGCTGCAGGCTCACATCGAACAACACAATTCCAATGGCTATCAGTGCACCAAGTGCGGTAAAACATTTAAGAAACTTTCGCACATGAACGAACACGATCAAGCGGTGCATTTGCTGTTGCGTCCATTCAAGTGCACATATTGTGATCTGAGCTTTGGCGCACGAAAGACACGCCGGAATCATGAATTGATACATACAGCGCAGTGGCCCGTTAAGTGTCCCGTATGTGGTAAGGGCTTTCGTGCCAATACATGTCTACATAAGCATATGCGTTCACACAAGACAACATGCGGCAAGAGTGAAAAAGCCATTAGGAGCCGCAAGCAAACGAAGGTCACTTCTTTAATCGATTCCTAA
- Protein Sequence
- MLPITRATVDEFCRSCLQQLNYTNADFEPMHDLQLDMDLRKWFHATTTSTPSLMIFNKEKPSNQLELFDLQTYPQRICHSCYTKASIFNEFQEKSMCAAVVLQEVYVDKPVDDEGLAKLKMFCASCLRNLRSSYRAKNAGNTHNLVENKQINDWLYDCTGVNVQAEPREEYAPSHICNICYKKLRNFVEYRRVAHESAEYLENVLGRVEVGVVGGDVEQNLVANDNNNTTDADAADDDNETVDIDADVVLTNKVSVPKTEVCVSPIMVVNANWKLIDTEVEEKLKEDPLDECNNDYECALLTAVDVLVKEEVLEPEVLLEQFVKEDYVDEKEQDEAEQKVHTAELKPVDAVYKSDENVTKKDVEPLHKREPKQLRRQKTKLTSKRAYDTSDDEESIASPASALDEWRNGSDSSDSASRSEKSSVASSPPAKRIKSAATKTTLVTKPHKLLTSSNKRKAGSGKKSGPKCKLIQCEQCSKKFRKRYMYDAHVRGVHEGSDTPFMCEMCPQSFRSYNNMRRHYIEAHEHATRLAASDADDDPDAPKTTKWSCTVCSAAFESKGFLSDHMLKSHAEVRQYKCDYCSRAFRRKDHMGDHINAVHHGIRAFKCGFCDKTFAARKTMRVHEMGHTGERPYTCEICNKTFRQPSDLKIHMEKHTTDPSLLCPICYRAKRNAAELQAHIEQHNSNGYQCTKCGKTFKKLSHMNEHDQAVHLLLRPFKCTYCDLSFGARKTRRNHELIHTAQWPVKCPVCGKGFRANTCLHKHMRSHKTTCGKSEKAIRSRKQTKVTSLIDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00890340;
- 90% Identity
- iTF_00891200;
- 80% Identity
- iTF_00891200;