Lmon004780.1
Basic Information
- Insect
- Leucophenga montana
- Gene Symbol
- -
- Assembly
- GCA_035044765.1
- Location
- JAWNNQ010000656.1:175247-179122[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 6.2e-05 0.0036 17.9 4.7 1 23 229 251 229 251 0.98 2 17 1.6e-05 0.00092 19.8 2.4 1 23 259 282 259 282 0.97 3 17 0.21 13 6.8 0.5 2 23 319 340 318 340 0.95 4 17 0.66 39 5.3 1.0 1 23 422 446 422 446 0.86 5 17 9.1 5.4e+02 1.7 1.4 1 20 453 472 453 474 0.89 6 17 0.07 4.1 8.3 3.7 1 23 483 505 483 505 0.95 7 17 0.00015 0.0087 16.8 1.4 2 23 513 535 512 535 0.95 8 17 0.00066 0.039 14.7 1.6 2 23 542 563 541 563 0.96 9 17 0.0081 0.48 11.3 0.1 2 21 590 609 589 610 0.93 10 17 0.0049 0.29 12.0 3.3 1 23 660 683 660 683 0.97 11 17 0.0093 0.55 11.1 1.4 2 23 721 743 720 743 0.96 12 17 2.9e-05 0.0017 19.0 2.2 2 23 782 804 781 804 0.94 13 17 0.0025 0.15 12.9 0.0 1 23 819 841 819 841 0.95 14 17 0.00037 0.022 15.5 2.2 1 23 847 869 847 869 0.99 15 17 4.7e-06 0.00028 21.5 2.0 1 23 875 897 875 897 0.97 16 17 0.00021 0.012 16.3 3.3 1 23 903 925 903 925 0.98 17 17 0.0004 0.024 15.4 0.1 1 22 931 952 931 955 0.90
Sequence Information
- Coding Sequence
- ATGTCTGTATGCCGTACTTGTGATACAAGTTCGGCCACTGAGCTGTACGAGCTCAAATCGTCGTATAGCGTAAAATATCCGGGAAAGCAGCTATTAGATTTATTGACAGAACTAGTTGAGATTAATCAAAATATGGCATACGAATCGCAACTGCCGCAACAAATTTGTGCCAATTGCACGGAGAAGCTAAATATCGCCTACGATTTTATGTTGCAAGCGCGTGAGGCTAATCAGCGACTGCTGGACGGTCTCAAACCAGACGTAAAGTTAAGCACTGCCGAATGCTGTTTAGAAGAATTGCCGctagagcaatttgttgctgttAAACTGGAACCCGCTGGCGAAGAGGCAACGCCCATGGAATTTGCTGAAACACTTATGGAGAATCATGATTCAGATCAGGACGACAACGACGATGATGACGTTGAAATGCAGCATGATTATGATATGCTTGATGATGCGCGCAGTGAGAGTAGTGCCGATGAAAAGGAGCAAGATGATCCGCTAACACTAATGAAGCAAAGAAAAGTTAAAGCGCTGCCAAAACAAAAAGACTTGCATGTTAaagatgctgatgctgatgccgGCGACAACTCAAGCTCTAGTGATGATGATGCGCCACTGCTAAAAcgcaaagaaaaaatgcaaaaagctaAGCAGCAGCAAgagaagaaagaaaaaccgtATACATGCGACGAATGCGGCAAATCTTTTCGTTTGTCACGCAGCCTGAAAACGCATAAGCATAAACATATACCGAAAAATAAAGAGAGTCATCCATGTACACAATGCACACGTAGATTTAGACGTCCGGAAACGTTGCAGCAGCATTTGAAGACGGCACATGCATCGGCAGATGGTACGCCACAACAAAAAAGCGCAACGCTTTCCGCACGCAAATTAGCAAAACAACTCGACATGAATCTTTGCAAGCCGCATGGGTGCAAGGTGATACAATGTATGATTTGTTTGCAACACTATACGAAAATAGCCGAATTGCGTAACCATTTAAGTGCACATCCCGAAATTGATACATTCTCGAGACGTACAGAAACGCTACAGGAGATTACCGATTCATTCTATCCGGATCTAAAAGAGGAAATTACCGAGGCAGCATTGGTAGCACGCATAAACAAAGATTTGAAAGCGGGCAAGTATGTGTACTTCTATTCGATAACCAACCAGGCAGGCTACGAGTTAAGATTGGAAAGTTCAGACTCGGATAGTGACGAAGACGGCGAAGTAGTACCGAAAAAGCATAACTATGCATGTGATTTGTGCGCGAACACAAAATATCGTCGCAAATACCAACTATTCGAACATCAGTTGGAAAAGCATTCCTGGGAAGAGGCACAACATGTCTGCCGGCGTTGTGATGCACGTTTCCTTAGCAAGCAGGTACTGCAACATCACTACGAGTCACAATGTCGTAATTCTCAAAAACGTTTTCTATGCAATCGTTGCCCACTGCGTTTTCGCTGGAGACACAATCTTAAATCACATTATAGAGATCACCGAACTAAGccAACAGCACTTATGTGCGAGCACTGTGATCGTAGCTATGACGATAAGAAATCGCTAACAATACACAAGCTTACGGTTCACACGGCTTCGACGTTGATGCCTTGCCTCTGGTGTAATCGTAAATTCTATCGACGTGATTATTTTGTTAAACATCTTAAGCGCCATGGTCTGAAGGAGCACGATTTGCCACTAGCTGAAACGCTTATTAAGGCGACAGCACAGCCCAATGGTGCTAAACGCATCAGCTGCAAGATTTGTCACATGCAATTCGAACGTATTATGGATTTAAGAGCACACATATTAATGGAGCTCAAGTTGAATTTAAGCTCACATCAGAGTTACGACTCATTGGCCAATTACTCCATAACAAACGAGTCTGGCTTTGAGTTGCATTTGGATGATTCGGAGACGGATAATGATGATGCGGCGACAGCCACAATGCACACTATACCGTACAAATGTGAAATCTGTCAAGTGCAATGTCGCCGGCGCTATGAAATGTTCCAGCATCAACGTGCAATGCACTGCCGTGATCCAATGCCGCATACATGcgacaaatgcatttttaaatgtgtAAACAAGCGCATACTTGAACATCATCTGCAAACACAATGCCAGAATCCGTTTAAGCAACTTAGCTGCGAACACTGTAACTATAAATTTATGTGGCCAGAAAACTTGGAACAACATCGTCAAACGCAACATGCTGGCGCATTTGAGACCAAGAGTACTGTGGCGGCAAGCATTTCCGTAGTAACTGGTGAAACGCCAGCAAAGGCAGCGCAAGCAGAGACAAAACCGGCACCAGTAGCGCTCTTAAACTGTCCACACTGTGATCGCACATACATGCATCAATCGTGGCTTAGAAATCATATACGCGATGTACACAGCGAAGCcggcaaaaagaagaaaaaggagTCGGAATGCAAATTTCTATGTTCACTATGTGGCAAAGAAGCATCATCGGCTGCTGCCTTGGTTACGCACGTGCGTCGTCACACTGGCGAAAGACCCTACAAATGTGACATGTGCGAAATGGGCTTTCCACGACACAGTGAGATGCTGCAGCATCGCCGAAAGCATACTGGCGAGAAGCCATACCATTGTACCGTTTGCGGTAAAGATTTTGCGCGTTCCGACAAACTGAAGCGGCATACGCTGATACACAGCGGTCTCaaaccatacaaatgcacattCTGCGAGAAAAGCTATCGCCAAACAAAGGATCTTAAATTACACTTGCAACAACATACCGGTGAAACGCCATTCGAATGCGCCACATGCGGGGAGCGTTTCATACAGCGTGTTGCACTGGAAAAGCATCGTATTATGCGTGGACACTTCGAGGAGATCCAGTAG
- Protein Sequence
- MSVCRTCDTSSATELYELKSSYSVKYPGKQLLDLLTELVEINQNMAYESQLPQQICANCTEKLNIAYDFMLQAREANQRLLDGLKPDVKLSTAECCLEELPLEQFVAVKLEPAGEEATPMEFAETLMENHDSDQDDNDDDDVEMQHDYDMLDDARSESSADEKEQDDPLTLMKQRKVKALPKQKDLHVKDADADAGDNSSSSDDDAPLLKRKEKMQKAKQQQEKKEKPYTCDECGKSFRLSRSLKTHKHKHIPKNKESHPCTQCTRRFRRPETLQQHLKTAHASADGTPQQKSATLSARKLAKQLDMNLCKPHGCKVIQCMICLQHYTKIAELRNHLSAHPEIDTFSRRTETLQEITDSFYPDLKEEITEAALVARINKDLKAGKYVYFYSITNQAGYELRLESSDSDSDEDGEVVPKKHNYACDLCANTKYRRKYQLFEHQLEKHSWEEAQHVCRRCDARFLSKQVLQHHYESQCRNSQKRFLCNRCPLRFRWRHNLKSHYRDHRTKPTALMCEHCDRSYDDKKSLTIHKLTVHTASTLMPCLWCNRKFYRRDYFVKHLKRHGLKEHDLPLAETLIKATAQPNGAKRISCKICHMQFERIMDLRAHILMELKLNLSSHQSYDSLANYSITNESGFELHLDDSETDNDDAATATMHTIPYKCEICQVQCRRRYEMFQHQRAMHCRDPMPHTCDKCIFKCVNKRILEHHLQTQCQNPFKQLSCEHCNYKFMWPENLEQHRQTQHAGAFETKSTVAASISVVTGETPAKAAQAETKPAPVALLNCPHCDRTYMHQSWLRNHIRDVHSEAGKKKKKESECKFLCSLCGKEASSAAALVTHVRRHTGERPYKCDMCEMGFPRHSEMLQHRRKHTGEKPYHCTVCGKDFARSDKLKRHTLIHSGLKPYKCTFCEKSYRQTKDLKLHLQQHTGETPFECATCGERFIQRVALEKHRIMRGHFEEIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00890329;
- 90% Identity
- iTF_00890329;
- 80% Identity
- -