Lmon000327.1
Basic Information
- Insect
- Leucophenga montana
- Gene Symbol
- -
- Assembly
- GCA_035044765.1
- Location
- JAWNNQ010000059.1:273032-277611[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0081 0.48 11.3 0.6 1 23 112 135 112 135 0.95 2 15 0.0004 0.023 15.4 0.2 2 23 141 163 140 163 0.93 3 15 2.5e-06 0.00015 22.3 2.8 2 23 174 196 173 196 0.96 4 15 0.54 32 5.5 1.4 2 23 327 349 327 349 0.94 5 15 5.9e-05 0.0035 18.0 5.1 1 23 358 381 358 381 0.98 6 15 0.036 2.1 9.2 9.9 2 23 553 574 553 574 0.97 7 15 8.9e-07 5.2e-05 23.7 3.3 1 23 580 603 580 603 0.96 8 15 1.9e-05 0.0011 19.5 0.2 1 23 608 631 608 631 0.96 9 15 1e-05 0.00059 20.4 4.3 1 23 647 669 647 669 0.97 10 15 0.00067 0.039 14.7 1.5 1 23 674 696 674 696 0.98 11 15 7.4e-06 0.00043 20.8 0.4 1 23 702 724 702 724 0.96 12 15 7.2e-05 0.0042 17.7 1.0 1 23 730 752 730 752 0.98 13 15 1.8e-06 0.00011 22.7 1.7 3 23 760 780 759 780 0.99 14 15 5.3e-08 3.1e-06 27.6 1.0 1 23 786 808 786 808 0.99 15 15 0.079 4.6 8.2 2.2 1 23 813 836 813 836 0.94
Sequence Information
- Coding Sequence
- ATGTCACAAATTAAACTCGATGCGGAACGCATCTGTCGCGTTTGTTTGCGTGAACAGAATGAACTTTTTCTGATTTACGACGAGGCACCCGTGGAGCAAGGTTTAAATATTGTACAGATTCTAAATGAGTGTACTCGATACACAGTGGAGAGGTATGATAAAATGCCACACCAGATGTGTGCCGCCTGCATTGCAGAGGCGCGTGCAGCATATCGCTTTAAGCGTACCGCCGATGAAGCCTACCGTACACTTGTCGCTATGCTTGGGCGTATACCGCGAAAGAACAAGGACAACCATGTCGATAATGGCACACAGACCGAGCAAAGCTCGTTGCATCCGTGTGAAATGTGCAATGAAAAACTGTTTAGCGCAAGCGAACTGCGACAGCATCGCAGCATAGAACATAATCAGCGCGAATTGAAGTGCAAGGTGTGCGGCAAGGTGTTCGACCAGCTGCGCGTATTGCAAATACATCTAACTCAGGCGCATAATGAGCAAATAACTGCGTCTGCTACACTCCGTTGCCGAGAATGTCAACGTGTATTCTCGCGGCGTGATCATCTGGTGCGACATATGCGTAATCTGCATGGTCAACCAGCTGCGACACAGCAGTATATTGGAACGCGTGGCAAATTGTCTGAAAAAGCGGTTAAACATGAGAAAGATGTGGATTATGCGCAAAGAGAAACGTCTGAAAATGATTCGCTACTGCAAGAAACAGAAATGATCAATTTTGAGCCGTGCTGGGCACAGAAATTCGAGTCAATCGATGCTGAAGAAGATGCTGTCGATGATAACAATTTGCAAACAAATCCAATATCTAGCGACGATGATTCCAATCACGCTGCGGACAATGATGTCAAACAAAAGTTATGGCTAGCACTGGAACCGGAAGTGTATATGGATGTCGATGCACAACAAAATGAACATCAAAAAGAAGCAGGGGAGGAACCACCGATGCCGGAAAGTGGAGACAGAACGTGCATGTTTTGTAATGAGCTATTCCAAAGCTACAAGGAACTATGCACACATCTTATTGTGGTTCATGAGCATGCCGGTTTGATGTACAAGTTCCGTTGCAAGTTATGCCAGCGACAGTTCAGACGTGATTATCACTTGCAGCGCCATTTGCAAACCGTACACAAATCTTTATTGGCTGGAATTGATGAAAGTGCAGAACCAACGccgaaaagcaaaaaattccTGCAATCGAAGTCGGATGATGAGAGCAAAGGAAACAACGATGTGTTTGAGTCTATGTATGAAGATGAGCATAGCGTAGGCAATGCAGTTAGCGACAGAGAAGATTCGTCTGATGATACTGGTGAGAATGAAGGTGAAGTCTTGAAAAAAGCTGGTGGGCTTAAGGATAAGAACGATGGAGGTCATACTGTGCATATAAAAATGGAACCTACACAGGCTGAAACTACGACAAATATGGAATTGGATTCAACAGTTATCACACTGAAGCACGAATTTCCAGAGGAATTCAGCGAAGATGTTGCCGGACCAACAGGTGTAGACGAAATGACATCGGACCCAAGAGTTGAGACATCGCCAGCGAAACGCAGCAAAGTTAAAGTTGAAATTGTTCGTGAGTATCTGCAGAAGAAGCGTACGCCGCGCAAGCAAAACACCGAAGACAATCCCGAGAATCGTTGTGACCAGTGTCAGCGTACTTTCTCACGCCACTGCCATCTATTACGGCATAAACTTTCACATTTGGAGCAAAAGCCTCACGAGTGTCCGCATTGTCCGAAAACATTTGCACGCAGCGATCATCTAAAGGCACATGTCCAAAGTTTGCACGGAAATAAGGACTATAAATGTACACTATGTGATGCAGCATTCTCGCGTGCAGATGCACTAGAACGACATAAGATAAGCAAACACGATGGCGCTGGACTCGACGGCATTGCTGGCGCCGAAACAAAGGTGCATCCGTGCGAATTCTGCGATAAGAAATTTACCAGCAAAAGCTATTTACGTAAGCACACACTGATGCATACGGATCTGCTGTATGCATGTAAGAGCTGTGACGAAACGTTCAAGGAACGTCAAAAGCTGCGCGAGCACGAAAAAACGCACGCATCCGAACGCAACTTTTTGTGCAGTATTTGTGGCGATAGCTTTGCACGTAATGATTATTTGCGCGTGCACATGCGCAGACATCTTGGTGAGAAGCCGTACAAGTGTAAATACTGTTCCAAAGGTTTTCCGCGTGCGACTGATGTTAAAGTGCACGAACGctatCATACTGGCACCAAACCGAACCTGTGCACATTATGCGGCAAGGGCTTTCATCGTGCCTACAATCTGACCATACATATGCGTACACACACGGGCGAGCGTCCATACCGCTGCGATCAGTGTCCGAAAAGCTTTACACAAAGCAACGATCTTAAAGCGCACATACGACGCCATACCGGCGAACGTTACAAGTGCAGCGAATGCGACGCTTGCTTTTTACAACTTTACGCTATGCGGCACCATGCGCTCAGCGTGCACGGTAAAAGAATTGAATCGAAAACAGGACGTTTGCAGCGCACTGGCCTATACGATGATCCAAATACGCAGCCCCAGATTATCACAACTTTGGTGGCGCCATCGTCGAGATACGCAGTACGTGAAACGGCAACCtcaacgcaacaacaaaatttatcaaCAGCAGCATTACTGGTGCAGCAACAAGAGTCAGCTCCGATTGTCATACATACACAACAATCGCAGGACTCACAGTATGCAAATTCAATTATAAATGTTGCCGAACAATCGCCAGCCGCAGCAACATCGATCGCGGGAAATAATTATCTCACGTCAGCCTACATACAATTGCCGAATAACATTGGTTAG
- Protein Sequence
- MSQIKLDAERICRVCLREQNELFLIYDEAPVEQGLNIVQILNECTRYTVERYDKMPHQMCAACIAEARAAYRFKRTADEAYRTLVAMLGRIPRKNKDNHVDNGTQTEQSSLHPCEMCNEKLFSASELRQHRSIEHNQRELKCKVCGKVFDQLRVLQIHLTQAHNEQITASATLRCRECQRVFSRRDHLVRHMRNLHGQPAATQQYIGTRGKLSEKAVKHEKDVDYAQRETSENDSLLQETEMINFEPCWAQKFESIDAEEDAVDDNNLQTNPISSDDDSNHAADNDVKQKLWLALEPEVYMDVDAQQNEHQKEAGEEPPMPESGDRTCMFCNELFQSYKELCTHLIVVHEHAGLMYKFRCKLCQRQFRRDYHLQRHLQTVHKSLLAGIDESAEPTPKSKKFLQSKSDDESKGNNDVFESMYEDEHSVGNAVSDREDSSDDTGENEGEVLKKAGGLKDKNDGGHTVHIKMEPTQAETTTNMELDSTVITLKHEFPEEFSEDVAGPTGVDEMTSDPRVETSPAKRSKVKVEIVREYLQKKRTPRKQNTEDNPENRCDQCQRTFSRHCHLLRHKLSHLEQKPHECPHCPKTFARSDHLKAHVQSLHGNKDYKCTLCDAAFSRADALERHKISKHDGAGLDGIAGAETKVHPCEFCDKKFTSKSYLRKHTLMHTDLLYACKSCDETFKERQKLREHEKTHASERNFLCSICGDSFARNDYLRVHMRRHLGEKPYKCKYCSKGFPRATDVKVHERYHTGTKPNLCTLCGKGFHRAYNLTIHMRTHTGERPYRCDQCPKSFTQSNDLKAHIRRHTGERYKCSECDACFLQLYAMRHHALSVHGKRIESKTGRLQRTGLYDDPNTQPQIITTLVAPSSRYAVRETATSTQQQNLSTAALLVQQQESAPIVIHTQQSQDSQYANSIINVAEQSPAAATSIAGNNYLTSAYIQLPNNIG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00890298;
- 90% Identity
- -
- 80% Identity
- -