Lmon015891.1
Basic Information
- Insect
- Leucophenga montana
- Gene Symbol
- -
- Assembly
- GCA_035044765.1
- Location
- JAWNNQ010001736.1:439984-442366[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.7e-13 5.4e-10 39.1 0.0 3 44 373 414 372 415 0.92 2 3 0.054 1.1e+02 2.9 0.0 28 37 445 454 444 460 0.88 3 3 7.3e-19 1.5e-15 56.9 0.0 4 41 483 520 481 522 0.95
Sequence Information
- Coding Sequence
- ATGGGCCACTCGGGCACCATACTCGATATACATCGCGCGTTACGCGATGATGAACTTAGTTGTGAAGTGACGCTTGTGGCGAAGGATGGCTGCACAGTGCGAGCTCATCGTTTTGTGCTCAGCACTTGCAGCGATTTGATGCGCAATGTGCTGGTGGACGTGCCACAGGGTCAGGACTGCACGGTTATGCTGCCGGACATAAATGGTGTACTACTGGACAGCATGCTCTCGTTTATCTACATAGGCGAAACAAATCTGCCGTCGTCCAGTCTTACAGAGTTTCTCGAGGCTATCAATTTGCTGGGCATTAAGTCGGCCATCAGTTTTGAGTGCAGCCCCAACAGCTTAAACAACAGCCTTAATTCCACGGCACTGGGCGATGTATCCGGTTTGAATATAAAATCAATCAGTGGCTTACAAATAACACAAGAAGAACTATTGGAGGAGGAGAGCGGCGTGGATAAAATTGTGTCCAACAATGCTATTACCGGCGAACAACAAACTGGACCACCGCATGAGATTGAATTTCTTGATGTATATAGCGGCACTAATGAGCAACCGAAGATCACCTATTCCATTGAGCATATGGGCGGTAGCGGTGGTCGTGCAGAGTTTATATTAACAGAAAATGCCAACGCTTATACAATCACCGAGACACAAACGCGTGACACTCATAAGCTGGGAAATTACTCAACAGCTGTGGTTGAGGAAACTAACGCTGAAATGGTCGAAGATGAGAACGATGAGGATGAAGATGAGAttgccgatgatgatgatgccgcCGCTgccgacgatgatgatgacaatgagGACAACGAGGAGGTCGACGATGCGCAAATGATCGAAGAAGAATATAATAATTCAGAGCCCATGATCGAAATGTCTGGCTCAAAAGTTTCGAATATAACTGATAATGCTGATGTTGTCGACGCAGAGCTGTCCGCTGATAATGGCGCTTCCGATGCACAGCTACTTGAAGCTGTCAAGTCAAGCATTAAAGCTAAATCTATAAAAATGCGTCAAGAACAGGCAGCACAAAAAAAACTACGTGAACATTTTCCGATCTTAAAAGTAaaaccatcaacatcaaataAAGTACGCAATGCCATTGAATGCGAAAATCTGGATAATGCTGCACATGCTGTGCTCTATGAAGGTTTCAGTTTGCAAAAGGCTGCTGATAAGTTTAATATCTCAAAAACAGTACTTTGGCGTCGTGTGCGCAAGGAGCCGGATTACATGAGCACCGGGCGTGAGAAACCGAAGTTATCGCTGGCCTATGAGCGTCTGAAGAGCGGTGATTCGTTGAAGAACATCAGTAAGGATCTACAAATACCTATGTCGACGCTGCATCGCCACAAGGTGCGTCTCTCGCATGAGGGTCGTTTGCCCAAGTTTTTGGCTAGTCGTCGTCGTGATTCTACGCCAAAAGATGAGCTACAGCAGAAATTGGCCAAAGCGGTGCACGCGTGCGTTAATGAGGGCATGTCACAGAATCATGCGgcgaatatttttgaaatacccAAGAGTACGTTGTGGCGCCATCTGAGACGACGAGTTAATGAGGCAGAAGAATCGATGGTCAATTCGGATGAAACAAAAAAGGAGTTAAGACTCAAGTAG
- Protein Sequence
- MGHSGTILDIHRALRDDELSCEVTLVAKDGCTVRAHRFVLSTCSDLMRNVLVDVPQGQDCTVMLPDINGVLLDSMLSFIYIGETNLPSSSLTEFLEAINLLGIKSAISFECSPNSLNNSLNSTALGDVSGLNIKSISGLQITQEELLEEESGVDKIVSNNAITGEQQTGPPHEIEFLDVYSGTNEQPKITYSIEHMGGSGGRAEFILTENANAYTITETQTRDTHKLGNYSTAVVEETNAEMVEDENDEDEDEIADDDDAAAADDDDDNEDNEEVDDAQMIEEEYNNSEPMIEMSGSKVSNITDNADVVDAELSADNGASDAQLLEAVKSSIKAKSIKMRQEQAAQKKLREHFPILKVKPSTSNKVRNAIECENLDNAAHAVLYEGFSLQKAADKFNISKTVLWRRVRKEPDYMSTGREKPKLSLAYERLKSGDSLKNISKDLQIPMSTLHRHKVRLSHEGRLPKFLASRRRDSTPKDELQQKLAKAVHACVNEGMSQNHAANIFEIPKSTLWRHLRRRVNEAEESMVNSDETKKELRLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00890046;
- 90% Identity
- iTF_00891098;
- 80% Identity
- iTF_00891098;